Os09g0258500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein kinase (EC 2.7.1.-) (Clone OSPK 2.1) (Fragment).
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Os09g0258500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein kinase (EC 2.7.1.-) (Clone OSPK 2.1) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.94 | 0.235 | 9.17 | 0.558 | 0.574 | 0.64 | -0.0976 | 0.559 | 0.236 | 5.12 | 27.48 | 15 | -- | -- |
| 25.36 | 0.235 | 9.16 | 0.653 | 0.57 | 0.623 | 0.0298 | -- | 0.254 | 5.1 | 28.19 | 17 | -- | -- |
| 24.93 | 0.234 | 9.17 | 0.556 | 0.579 | 0.631 | -- | 0.538 | 0.234 | 5.13 | 27.43 | 14 | -- | -- |
| 25.36 | 0.235 | 9.16 | 0.653 | 0.569 | 0.623 | -- | -- | 0.255 | 5.12 | 28.23 | 17 | -- | -- |
| 37.97 | 0.287 | 9.16 | 0.634 | -- | 1.02 | -- | 0.535 | 0.28 | -- | 31.35 | 50 | -- | -- |
| 30.69 | 0.26 | 9.19 | 0.501 | 0.723 | -- | 0.183 | -- | 0.123 | 4.36 | -- | -- | -- | -- |
| 30.78 | 0.26 | 9.19 | 0.5 | 0.724 | -- | -- | -- | 0.122 | 4.38 | -- | -- | -- | -- |
| 37.58 | 0.286 | 9.16 | 0.774 | -- | 1.08 | -- | -- | 0.326 | -- | 30.84 | 147 | -- | -- |
| 35.36 | 0.278 | 9.19 | -- | 0.645 | 0.356 | -- | -- | 0.132 | 4.75 | 28.23 | 17 | -- | -- |
| 58.96 | 0.359 | 9.2 | 0.528 | -- | -- | -- | -- | 0.141 | -- | -- | -- | -- | -- |
| 37.36 | 0.286 | 9.21 | -- | 0.734 | -- | -- | -- | 0.0664 | 4.37 | -- | -- | -- | -- |
| 52.14 | 0.336 | 9.19 | -- | -- | 0.932 | -- | -- | 0.188 | -- | 34 | 130 | -- | -- |
| 66.32 | 0.38 | 9.21 | -- | -- | -- | -- | -- | 0.0826 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.53 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 2 | 23.53 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 3 | 23.58 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 4 | 24.50 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 5 | 24.51 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 7 | 24.59 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 9 | 24.66 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 23 | 24.98 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 25 | 25.01 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 29 | 25.03 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 41 | 25.11 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 59 | 25.20 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 71 | 25.22 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 75 | 25.22 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 6 | 21 |
| 81 | 25.24 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 117 | 25.31 | temperature | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 123 | 25.31 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 129 | 25.32 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 130 | 25.32 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 145 | 25.36 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 146 | 25.36 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 13 | 3 |
| 151 | 25.37 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 155 | 25.38 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 9 |
| 174 | 25.40 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 238 | 25.48 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 251 | 25.49 | temperature | 25.0 | 10 | < th | dose dependent | sin | 21 | NA |
| 276 | 25.51 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 367 | 25.63 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 385 | 25.65 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 402 | 25.66 | wind | 5.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 408 | 25.66 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 419 | 25.68 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 438 | 25.69 | temperature | 10.0 | 10 | > th | dose dependent | no | NA | NA |
| 439 | 25.69 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 441 | 25.70 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 457 | 25.71 | wind | 5.0 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 465 | 25.71 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 467 | 25.72 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 495 | 25.74 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 1 | 14 |
| 572 | 25.79 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 601 | 25.81 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 675 | 25.83 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 4 |
| 687 | 25.84 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 1 | 14 |
| 717 | 25.85 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 19 | 20 |
| 730 | 25.86 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 758 | 25.87 | wind | 5.0 | 14400 | < th | dose independent | rect. | 11 | 6 |
| 818 | 25.89 | wind | 3.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 843 | 25.89 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 8 | 14 |
| 915 | 25.92 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 948 | 25.92 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 12 |
| 953 | 25.93 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 958 | 25.93 | wind | 5.0 | 14400 | > th | dose independent | rect. | 11 | 6 |
| 991 | 25.94 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 14 | 1 |