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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0257900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0243) R2 : 0.000322
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0196 (0.0512) R2dN8 : 0.000415 R2N8 : 0.000322
σ : 0.458
deviance : 96.25
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
93.13 0.453 3 -0.893 0.0823 0.619 -0.399 -5.1 0.0136 7.96 30.2 4364 -- --
94.87 0.457 2.9 -0.0385 0.0793 -0.0672 -0.412 -- 0.0247 8.93 26.8 4045 -- --
93.54 0.45 3 -0.914 0.0919 0.622 -- -5.17 0.0133 6.64 30.2 4364 -- --
95.25 0.455 2.91 -0.178 0.0553 0.211 -- -- -0.025 8.86 12.02 8898 -- --
93.97 0.451 3 -0.907 -- 0.622 -- -5.13 0.015 -- 30.23 4364 -- --
95.26 0.458 2.91 -0.0583 0.075 -- -0.421 -- 0.0108 8.26 -- -- -- --
95.76 0.458 2.91 -0.0719 0.0821 -- -- -- 0.0103 7.05 -- -- -- --
95.33 0.455 2.91 -0.185 -- 0.199 -- -- -0.0162 -- 12.28 10292 -- --
95.76 0.456 2.91 -- 0.0752 0.107 -- -- 0.0147 8.61 12.91 8878 -- --
96.12 0.458 2.91 -0.0703 -- -- -- -- 0.0118 -- -- -- -- --
95.9 0.458 2.9 -- 0.0813 -- -- -- 0.0183 7.1 -- -- -- --
96.01 0.456 2.91 -- -- 0.0957 -- -- 0.0097 -- 12.31 10177 -- --
96.25 0.458 2.91 -- -- -- -- -- 0.0196 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 91.03 wind 1.0 1440 < th dose independent rect. 17 8
2 91.04 temperature 30.0 720 > th dose dependent rect. 18 1
16 91.10 wind 1.0 720 < th dose dependent rect. 23 2
17 91.20 temperature 30.0 4320 > th dose independent rect. 16 1
18 91.23 temperature 30.0 4320 < th dose independent rect. 16 1
20 91.33 humidity 70.0 720 > th dose independent rect. 5 4
21 91.45 humidity 70.0 270 > th dose independent rect. 21 12
22 91.45 wind 1.0 1440 < th dose dependent rect. 17 8
23 91.49 wind 1.0 1440 < th dose independent rect. 23 2
24 91.50 wind 1.0 1440 > th dose independent rect. 17 8
29 91.66 wind 1.0 1440 > th dose independent rect. 23 2
30 91.68 humidity 70.0 270 < th dose independent rect. 8 1
35 91.94 precipitation 0.1 270 > th dose independent rect. 2 1
36 91.94 precipitation 0.1 270 > th dose dependent rect. 2 1
39 91.99 humidity 70.0 720 > th dose independent rect. 23 10
42 92.09 wind 1.0 1440 < th dose independent rect. 21 4
80 92.25 temperature 30.0 4320 < th dose independent rect. 16 11
87 92.25 wind 1.0 1440 < th dose dependent rect. 21 4
92 92.27 humidity 70.0 270 < th dose dependent rect. 8 1
98 92.29 temperature 30.0 4320 < th dose independent rect. 16 16
101 92.30 temperature 30.0 4320 < th dose independent rect. 16 7
105 92.30 humidity 60.0 10 < th dose dependent rect. 17 17
109 92.31 temperature 25.0 90 > th dose dependent rect. 22 1
138 92.32 humidity 60.0 30 < th dose independent rect. 18 16
175 92.34 wind 1.0 1440 > th dose independent rect. 19 6
176 92.34 humidity 70.0 720 > th dose independent rect. 3 6
188 92.35 wind 1.0 10 < th dose dependent rect. 7 3
203 92.36 humidity 60.0 10 < th dose independent rect. 10 1
208 92.36 wind 1.0 10 < th dose dependent rect. 9 1
209 92.36 humidity 60.0 10 < th dose dependent rect. 9 1
375 92.39 humidity 60.0 4320 < th dose independent rect. 8 1
407 92.41 temperature 25.0 270 > th dose dependent rect. 20 1
408 92.42 wind 1.0 10 < th dose independent rect. 9 1
410 92.42 atmosphere 995.0 4320 > th dose independent rect. 7 7
411 92.42 radiation 1.0 4320 < th dose dependent rect. 23 1
417 92.43 atmosphere 995.0 4320 > th dose independent rect. 4 9
449 92.45 wind 1.0 10 < th dose dependent rect. 9 5
486 92.50 atmosphere 995.0 4320 < th dose dependent rect. 14 1
487 92.50 radiation 40.0 30 > th dose dependent rect. 9 1
517 92.51 wind 1.0 1440 < th dose dependent rect. 17 5
531 92.53 atmosphere 995.0 4320 < th dose independent rect. 14 1
540 92.53 radiation 40.0 10 > th dose dependent sin 12 NA
570 92.54 atmosphere 995.0 4320 > th dose independent rect. 10 4
598 92.56 wind 1.0 1440 > th dose independent rect. 17 1
599 92.56 temperature 30.0 4320 > th dose independent rect. 12 1
600 92.56 humidity 50.0 720 < th dose independent rect. 16 1
601 92.56 precipitation 0.1 270 > th dose independent rect. 24 4
651 92.59 temperature 30.0 4320 < th dose independent rect. 12 1
669 92.61 wind 1.0 10 < th dose independent rect. 9 9
673 92.61 humidity 50.0 720 < th dose dependent rect. 16 1
697 92.62 wind 1.0 10 < th dose independent rect. 9 5
770 92.67 wind 1.0 1440 < th dose independent rect. 17 1
771 92.67 precipitation 0.1 1440 > th dose independent rect. 12 1
774 92.67 wind 1.0 1440 < th dose dependent rect. 21 1
776 92.67 precipitation 0.1 1440 > th dose dependent rect. 12 1
804 92.70 atmosphere 995.0 4320 > th dose independent rect. 12 2
805 92.70 atmosphere 995.0 4320 > th dose independent rect. 12 5
808 92.70 temperature 25.0 270 > th dose dependent rect. 20 3
820 92.72 wind 1.0 1440 < th dose dependent rect. 17 1
826 92.73 radiation 1.0 4320 < th dose dependent rect. 22 5
827 92.74 wind 7.0 4320 > th dose independent rect. 6 1
834 92.74 humidity 60.0 30 > th dose independent rect. 21 14
837 92.74 wind 7.0 4320 > th dose dependent rect. 6 1
844 92.75 wind 1.0 10 < th dose independent rect. 6 8
867 92.76 atmosphere 995.0 4320 > th dose independent rect. 10 7
884 92.77 wind 1.0 10 < th dose dependent sin 22 NA
886 92.77 radiation 1.0 4320 < th dose dependent rect. 1 1
915 92.77 radiation 40.0 10 > th dose dependent rect. 12 23
953 92.81 humidity 50.0 720 > th dose dependent rect. 6 3
963 92.83 radiation 1.0 30 < th dose dependent rect. 5 1
988 92.88 humidity 50.0 4320 < th dose independent rect. 12 2
993 92.89 atmosphere 995.0 4320 > th dose independent rect. 15 1
996 92.89 atmosphere 995.0 4320 > th dose independent rect. 12 9