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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0256700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.48 (0.062) R2 : 0.755
β1 : -5.31 (0.231) R2dD : 0.311 R2D : 0.0561
β2 : 3.19 (0.152) R2dC : 0.238 R2C : 0.174
β3 : -4.36 (0.272) R2dE : 0.151 R2E : -0.0409
β4 : 2.92 (0.614) R2dD*C : 0.0123 R2D*C : -0.0673
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -3.04 (0.135) R2dN8 : 0.387 R2N8 : 0.0931
σ : 1.15
deviance : 609.02
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_____
C
peak time of C : 9.22
E
wheather : humidity
threshold : 82
memory length : 1342
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11.2
open length of G : 2.9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
610.31 1.16 7.48 -5.24 3.18 -4.32 2.88 -0.183 -3.04 9.21 82.02 1341 11.2 3.08
609.02 1.15 7.48 -5.31 3.19 -4.36 2.92 -- -3.04 9.22 82 1342 11.2 2.9
638.09 1.18 7.47 -5.13 3.17 -4.4 -- -0.959 -3.03 9.18 82.21 1342 11.2 3.05
639.13 1.18 7.47 -5.23 3.19 -4.31 -- -- -3.04 9.17 82.24 1346 11.2 2.9
1154.04 1.58 7.56 -5.07 -- -4.99 -- -0.465 -2.97 -- 81 1080 11.5 2.79
953.52 1.45 7.36 -4.59 3.36 -- 2.48 -- -2.52 9.29 -- -- -- --
975.51 1.46 7.36 -4.5 3.35 -- -- -- -2.51 9.27 -- -- -- --
1155.17 1.58 7.56 -5.07 -- -5.05 -- -- -2.97 -- 80.97 1080 11.5 2.78
1220.14 1.63 7.39 -- 3.17 -2.79 -- -- -2.48 9.43 83.55 1311 13.2 1.23
1628.99 1.89 7.45 -4.51 -- -- -- -- -2.5 -- -- -- -- --
1508.64 1.82 7.25 -- 3.35 -- -- -- -2.01 9.37 -- -- -- --
1712.58 1.93 7.47 -- -- -3.61 -- -- -2.38 -- 83.01 955 13.3 1.58
2165.94 2.17 7.34 -- -- -- -- -- -2 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 654.10 humidity 80 1440 > th dose independent rect. 11 3
2 661.85 humidity 80 1440 < th dose independent rect. 11 3
3 667.66 humidity 70 1440 > th dose dependent rect. 11 3
4 670.99 radiation 10 1440 > th dose independent rect. 11 2
5 674.30 radiation 10 1440 < th dose dependent rect. 11 3
6 674.49 radiation 10 1440 < th dose dependent rect. 13 1
8 677.52 radiation 10 1440 < th dose dependent rect. 11 5
12 680.22 humidity 80 1440 > th dose independent rect. 13 1
16 683.41 humidity 80 1440 < th dose independent rect. 8 7
31 689.23 humidity 80 1440 > th dose independent rect. 7 9
77 700.27 radiation 10 1440 < th dose dependent rect. 11 15
78 700.27 radiation 10 1440 < th dose dependent rect. 11 17
81 700.33 radiation 10 1440 < th dose dependent rect. 11 13
82 700.34 radiation 10 1440 < th dose dependent rect. 11 11
114 702.99 humidity 80 1440 < th dose independent sin 1 NA
139 705.34 humidity 80 1440 > th dose independent sin 1 NA
163 708.12 radiation 10 1440 > th dose independent rect. 11 5
204 713.68 humidity 90 1440 < th dose dependent rect. 11 3
267 722.09 radiation 10 1440 < th dose dependent sin 19 NA
274 723.08 radiation 10 1440 > th dose independent rect. 11 20
360 729.96 radiation 1 1440 < th dose independent rect. 9 4
407 734.86 radiation 1 1440 < th dose independent rect. 11 2
467 738.33 radiation 10 1440 > th dose independent rect. 8 8
544 743.16 radiation 10 1440 > th dose independent sin 21 NA
546 743.26 radiation 10 1440 > th dose independent rect. 8 10
560 743.52 humidity 90 1440 < th dose dependent rect. 2 14
660 747.62 humidity 50 720 > th dose dependent rect. 5 23
744 751.33 humidity 60 720 > th dose dependent rect. 7 20
767 752.65 radiation 10 1440 > th dose independent rect. 17 23
775 752.96 humidity 90 1440 < th dose dependent sin 0 NA
791 753.40 humidity 60 720 > th dose dependent rect. 11 16
797 753.87 humidity 50 1440 > th dose dependent rect. 4 12
823 754.51 humidity 50 720 > th dose dependent rect. 11 22
844 755.26 humidity 70 1440 > th dose dependent sin 23 NA
881 756.44 humidity 50 720 > th dose dependent rect. 20 23
950 758.05 humidity 50 720 > th dose dependent rect. 18 23
968 758.47 humidity 60 720 > th dose dependent rect. 7 16
970 758.50 humidity 60 720 > th dose dependent sin 21 NA
971 758.53 humidity 90 720 < th dose dependent rect. 11 15
985 758.71 humidity 90 720 < th dose dependent rect. 11 17
990 758.77 humidity 90 720 < th dose dependent rect. 11 20