Os09g0255300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os09g0255300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.52 | 0.371 | 8.07 | 1.14 | 1.05 | 1.02 | -1.61 | -0.721 | 0.0413 | 22.3 | 26.3 | 4519 | -- | -- |
| 62.84 | 0.369 | 8.09 | 1.03 | 1.03 | 1.14 | -1.56 | -- | 0.0277 | 22.3 | 24.66 | 4526 | -- | -- |
| 72.92 | 0.398 | 8.07 | 1.21 | 1.06 | 1.04 | -- | -0.731 | 0.0537 | 22.2 | 26.44 | 4527 | -- | -- |
| 73.24 | 0.399 | 8.09 | 1.11 | 1.05 | 1.16 | -- | -- | 0.0358 | 22.2 | 24.49 | 4560 | -- | -- |
| 121.47 | 0.516 | 8.04 | 1.02 | -- | 1.33 | -- | -1.14 | 0.0762 | -- | 26.44 | 4527 | -- | -- |
| 82.91 | 0.427 | 8.16 | 0.448 | 1.04 | -- | -1.65 | -- | -0.264 | 22.2 | -- | -- | -- | -- |
| 93.74 | 0.453 | 8.16 | 0.513 | 1.05 | -- | -- | -- | -0.26 | 22.1 | -- | -- | -- | -- |
| 122.75 | 0.518 | 8.07 | 0.866 | -- | 1.5 | -- | -- | 0.00275 | -- | 24.49 | 4560 | -- | -- |
| 89.24 | 0.442 | 8.14 | -- | 0.949 | 1.04 | -- | -- | -0.194 | 21.1 | 62.81 | 3678 | -- | -- |
| 160.19 | 0.591 | 8.13 | 0.528 | -- | -- | -- | -- | -0.259 | -- | -- | -- | -- | -- |
| 100.69 | 0.469 | 8.17 | -- | 1.05 | -- | -- | -- | -0.318 | 22.2 | -- | -- | -- | -- |
| 139.71 | 0.552 | 8.1 | -- | -- | 1.18 | -- | -- | -0.151 | -- | 31.28 | 4494 | -- | -- |
| 167.54 | 0.604 | 8.14 | -- | -- | -- | -- | -- | -0.317 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.38 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 3 | 60.47 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 4 | 60.60 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 27 | 60.85 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 8 |
| 181 | 61.32 | temperature | 25 | 4320 | < th | dose dependent | sin | 15 | NA |
| 301 | 61.62 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 309 | 61.65 | temperature | 10 | 4320 | > th | dose dependent | sin | 14 | NA |
| 461 | 61.98 | temperature | 15 | 270 | > th | dose dependent | sin | 9 | NA |
| 525 | 62.11 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 664 | 62.35 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 709 | 62.42 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 13 |
| 751 | 62.49 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 988 | 62.72 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |