Os09g0253000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NOI protein.
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Os09g0253000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NOI protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.52 | 0.213 | 13.7 | -0.258 | 0.394 | -0.418 | 0.184 | -0.585 | -0.185 | 6.81 | 19.81 | 72 | -- | -- |
| 20.76 | 0.214 | 13.7 | -0.262 | 0.397 | -0.34 | 0.197 | -- | -0.2 | 6.4 | 21.8 | 60 | -- | -- |
| 20.6 | 0.211 | 13.7 | -0.254 | 0.395 | -0.42 | -- | -0.545 | -0.185 | 6.92 | 18.77 | 70 | -- | -- |
| 20.85 | 0.214 | 13.7 | -0.259 | 0.398 | -0.35 | -- | -- | -0.2 | 6.53 | 21.8 | 60 | -- | -- |
| 24.34 | 0.23 | 13.7 | -0.336 | -- | -0.406 | -- | -0.494 | -0.208 | -- | -5.238e-06 | 559 | -- | -- |
| 22.78 | 0.224 | 13.7 | -0.262 | 0.409 | -- | 0.323 | -- | -0.197 | 5.41 | -- | -- | -- | -- |
| 23.02 | 0.225 | 13.7 | -0.261 | 0.411 | -- | -- | -- | -0.198 | 5.55 | -- | -- | -- | -- |
| 23.79 | 0.227 | 13.7 | -0.227 | -- | -0.477 | -- | -- | -0.147 | -- | -1.389 | 630 | -- | -- |
| 22.58 | 0.223 | 13.7 | -- | 0.397 | -0.355 | -- | -- | -0.172 | 6.76 | 17 | 60 | -- | -- |
| 31.82 | 0.264 | 13.7 | -0.247 | -- | -- | -- | -- | -0.188 | -- | -- | -- | -- | -- |
| 24.82 | 0.233 | 13.7 | -- | 0.407 | -- | -- | -- | -0.169 | 5.58 | -- | -- | -- | -- |
| 25.15 | 0.234 | 13.7 | -- | -- | -0.485 | -- | -- | -0.121 | -- | -9.811 | 630 | -- | -- |
| 33.44 | 0.27 | 13.7 | -- | -- | -- | -- | -- | -0.161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.07 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 2 | 19.18 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 3 | 19.19 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 7 | 19.25 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 27 | 19.37 | temperature | 25 | 90 | > th | dose dependent | sin | 4 | NA |
| 30 | 19.38 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 46 | 19.47 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 2 |
| 51 | 19.50 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 4 |
| 76 | 19.60 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 7 |
| 95 | 19.65 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 109 | 19.67 | temperature | 25 | 270 | > th | dose independent | sin | 4 | NA |
| 198 | 19.81 | radiation | 40 | 10 | < th | dose independent | rect. | 3 | 23 |
| 209 | 19.82 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 222 | 19.83 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 12 |
| 303 | 19.92 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 14 |
| 340 | 19.96 | wind | 9 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 406 | 20.01 | radiation | 40 | 10 | > th | dose independent | rect. | 13 | 23 |
| 518 | 20.11 | radiation | 40 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 519 | 20.12 | radiation | 30 | 90 | < th | dose independent | rect. | 3 | 8 |
| 540 | 20.14 | radiation | 30 | 270 | > th | dose dependent | sin | 10 | NA |
| 549 | 20.15 | radiation | 40 | 10 | < th | dose independent | sin | 4 | NA |
| 559 | 20.16 | radiation | 40 | 10 | < th | dose independent | sin | 7 | NA |
| 573 | 20.16 | temperature | 15 | 30 | > th | dose dependent | rect. | 9 | 18 |
| 590 | 20.18 | radiation | 30 | 270 | < th | dose independent | sin | 10 | NA |
| 634 | 20.21 | radiation | 40 | 10 | < th | dose independent | rect. | 23 | 23 |
| 638 | 20.21 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 11 |
| 682 | 20.24 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 22 |
| 700 | 20.25 | radiation | 40 | 270 | > th | dose dependent | rect. | 14 | 21 |
| 702 | 20.26 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 11 |
| 714 | 20.27 | radiation | 30 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 750 | 20.28 | radiation | 40 | 10 | < th | dose independent | rect. | 3 | 11 |
| 756 | 20.28 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 10 |
| 774 | 20.29 | radiation | 40 | 90 | < th | dose independent | sin | 5 | NA |
| 795 | 20.30 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 817 | 20.31 | radiation | 20 | 270 | < th | dose independent | sin | 6 | NA |
| 831 | 20.32 | wind | 9 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 832 | 20.32 | humidity | 80 | 720 | > th | dose independent | rect. | 19 | 2 |
| 835 | 20.32 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 12 |
| 837 | 20.32 | radiation | 40 | 10 | < th | dose independent | rect. | 3 | 21 |
| 867 | 20.33 | radiation | 40 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 915 | 20.34 | radiation | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 959 | 20.37 | radiation | 40 | 270 | > th | dose independent | sin | 11 | NA |
| 989 | 20.38 | radiation | 40 | 270 | < th | dose dependent | sin | 5 | NA |