Os09g0251800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : C2 calcium/lipid-binding region, CaLB domain containing protein.
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Os09g0251800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : C2 calcium/lipid-binding region, CaLB domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.78 | 0.387 | 11.7 | -0.128 | 1.46 | -0.0484 | -0.575 | -3.74 | -0.262 | 15.4 | 14.89 | 5789 | -- | -- |
| 78.99 | 0.417 | 11.5 | 0.734 | 1.34 | 0.485 | -0.584 | -- | -0.0499 | 15.4 | 10.39 | 11000 | -- | -- |
| 68.73 | 0.386 | 11.7 | -0.13 | 1.46 | -0.0551 | -- | -3.74 | -0.261 | 15.4 | 14.7 | 5924 | -- | -- |
| 80.02 | 0.419 | 11.5 | 0.728 | 1.35 | 0.464 | -- | -- | -0.0504 | 15.5 | 10.39 | 11000 | -- | -- |
| 143.47 | 0.561 | 11.6 | -0.00402 | -- | 1.96 | -- | -2.94 | -0.394 | -- | 14.7 | 5924 | -- | -- |
| 81.24 | 0.423 | 11.5 | 0.828 | 1.47 | -- | -0.523 | -- | 0.0176 | 15.3 | -- | -- | -- | -- |
| 82.09 | 0.424 | 11.5 | 0.818 | 1.47 | -- | -- | -- | 0.0146 | 15.4 | -- | -- | -- | -- |
| 150.75 | 0.574 | 11.6 | 0.405 | -- | 1.93 | -- | -- | -0.281 | -- | 10.39 | 11000 | -- | -- |
| 85.7 | 0.431 | 11.6 | -- | 1.48 | 0.603 | -- | -- | -0.256 | 15.4 | 7.297 | 47520 | -- | -- |
| 204.34 | 0.668 | 11.5 | 0.755 | -- | -- | -- | -- | -0.0243 | -- | -- | -- | -- | -- |
| 99.72 | 0.467 | 11.5 | -- | 1.46 | -- | -- | -- | -0.0764 | 15.4 | -- | -- | -- | -- |
| 154.57 | 0.581 | 11.6 | -- | -- | 2.06 | -- | -- | -0.341 | -- | 6.853 | 47520 | -- | -- |
| 219.39 | 0.691 | 11.5 | -- | -- | -- | -- | -- | -0.108 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.94 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 2 | 63.98 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 3 | 64.00 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 4 | 64.03 | wind | 1 | 43200 | > th | dose independent | rect. | 15 | 11 |
| 33 | 64.32 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 37 | 64.36 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 20 |
| 38 | 64.38 | wind | 7 | 43200 | > th | dose independent | sin | 10 | NA |
| 41 | 64.41 | wind | 7 | 43200 | < th | dose independent | sin | 10 | NA |
| 54 | 64.52 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 19 |
| 67 | 64.59 | wind | 5 | 43200 | > th | dose dependent | sin | 10 | NA |
| 73 | 64.64 | wind | 5 | 43200 | > th | dose dependent | rect. | 18 | 15 |
| 79 | 64.67 | wind | 1 | 43200 | < th | dose independent | rect. | 13 | 13 |
| 93 | 64.73 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 21 |
| 104 | 64.79 | wind | 1 | 43200 | < th | dose independent | rect. | 15 | 11 |
| 106 | 64.80 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 19 |
| 126 | 64.87 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 19 |
| 131 | 64.89 | wind | 5 | 43200 | > th | dose independent | sin | 4 | NA |
| 140 | 64.92 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 19 |
| 144 | 64.94 | wind | 5 | 43200 | > th | dose independent | rect. | 1 | 14 |
| 159 | 64.97 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 19 |
| 161 | 64.98 | wind | 5 | 43200 | < th | dose independent | sin | 4 | NA |
| 175 | 65.00 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 14 |
| 191 | 65.04 | wind | 5 | 43200 | < th | dose independent | rect. | 1 | 14 |
| 219 | 65.11 | wind | 1 | 43200 | > th | dose independent | sin | 17 | NA |
| 232 | 65.15 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 16 |
| 276 | 65.25 | wind | 5 | 43200 | > th | dose dependent | sin | 5 | NA |
| 280 | 65.26 | wind | 5 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 282 | 65.26 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 15 |
| 343 | 65.38 | humidity | 70 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 358 | 65.41 | wind | 1 | 43200 | < th | dose dependent | rect. | 7 | 18 |
| 386 | 65.45 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 399 | 65.49 | wind | 1 | 43200 | < th | dose independent | sin | 17 | NA |
| 442 | 65.56 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 448 | 65.56 | wind | 1 | 43200 | < th | dose dependent | sin | 18 | NA |
| 506 | 65.67 | temperature | 20 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 507 | 65.67 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 521 | 65.69 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 524 | 65.69 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 8 |
| 529 | 65.70 | wind | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 539 | 65.72 | temperature | 20 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 548 | 65.74 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 570 | 65.77 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 16 |
| 599 | 65.80 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 5 |
| 605 | 65.81 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 634 | 65.83 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 666 | 65.87 | humidity | 60 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 696 | 65.91 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 718 | 65.94 | wind | 1 | 14400 | > th | dose independent | rect. | 18 | 8 |
| 742 | 65.96 | wind | 1 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 763 | 66.00 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 822 | 66.06 | wind | 7 | 43200 | < th | dose independent | rect. | 21 | 3 |
| 839 | 66.08 | wind | 7 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 846 | 66.08 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 851 | 66.08 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 2 | 14 |
| 939 | 66.17 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 5 | 21 |
| 940 | 66.17 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 3 | 22 |
| 955 | 66.19 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 7 | 19 |