Os09g0250400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os09g0250400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 121.39 | 0.518 | 5.89 | -1.29 | 0.152 | 0.0765 | 0.419 | 2.19 | -0.425 | 22.9 | 19.2 | 737 | -- | -- |
| 130.23 | 0.531 | 5.84 | -0.966 | 0.173 | -0.285 | 0.0417 | -- | -0.345 | 22.8 | 18.4 | 292 | -- | -- |
| 121.94 | 0.514 | 5.88 | -1.28 | 0.158 | 0.0505 | -- | 2 | -0.421 | 21.8 | 19.3 | 736 | -- | -- |
| 129.05 | 0.529 | 5.83 | -0.999 | 0.154 | -0.751 | -- | -- | -0.343 | 21.9 | 16.3 | 440 | -- | -- |
| 123.36 | 0.517 | 5.88 | -1.29 | -- | 0.00479 | -- | 1.96 | -0.416 | -- | 19.3 | 743 | -- | -- |
| 131.84 | 0.538 | 5.83 | -0.952 | 0.163 | -- | -0.305 | -- | -0.32 | 20.8 | -- | -- | -- | -- |
| 132.08 | 0.538 | 5.83 | -0.944 | 0.165 | -- | -- | -- | -0.321 | 21.7 | -- | -- | -- | -- |
| 126.89 | 0.525 | 5.83 | -1.09 | -- | -1.78 | -- | -- | -0.38 | -- | 14.6 | 1763 | -- | -- |
| 152.56 | 0.575 | 5.81 | -- | 0.184 | -1.13 | -- | -- | -0.231 | 20.7 | 14.4 | 1887 | -- | -- |
| 133.68 | 0.54 | 5.82 | -0.942 | -- | -- | -- | -- | -0.322 | -- | -- | -- | -- | -- |
| 155.54 | 0.583 | 5.8 | -- | 0.164 | -- | -- | -- | -0.216 | 21.2 | -- | -- | -- | -- |
| 154.36 | 0.581 | 5.8 | -- | -- | -1.17 | -- | -- | -0.224 | -- | 14.6 | 1763 | -- | -- |
| 157.1 | 0.585 | 5.8 | -- | -- | -- | -- | -- | -0.217 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 119.49 | temperature | 15 | 1440 | > th | dose independent | rect. | 16 | 8 |
| 2 | 119.86 | temperature | 15 | 30 | > th | dose independent | rect. | 3 | 23 |
| 3 | 119.90 | temperature | 20 | 720 | < th | dose dependent | rect. | 14 | 13 |
| 16 | 120.11 | temperature | 20 | 720 | < th | dose dependent | sin | 15 | NA |
| 17 | 120.13 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 8 |
| 60 | 120.73 | temperature | 15 | 270 | > th | dose independent | rect. | 10 | 14 |
| 67 | 120.88 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 19 |
| 72 | 120.90 | temperature | 20 | 720 | < th | dose dependent | rect. | 22 | 3 |
| 100 | 121.17 | humidity | 90 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 107 | 121.25 | humidity | 90 | 1440 | > th | dose independent | rect. | 12 | 6 |
| 111 | 121.28 | humidity | 90 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 120 | 121.35 | wind | 3 | 10 | < th | dose dependent | rect. | 23 | 3 |
| 121 | 121.35 | humidity | 90 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 132 | 121.43 | wind | 1 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 145 | 121.48 | temperature | 20 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 147 | 121.49 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 4 |
| 162 | 121.55 | temperature | 20 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 164 | 121.55 | temperature | 15 | 30 | > th | dose independent | rect. | 23 | 3 |
| 175 | 121.60 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 22 |
| 185 | 121.64 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 186 | 121.64 | temperature | 15 | 4320 | < th | dose dependent | rect. | 3 | 17 |
| 195 | 121.70 | temperature | 20 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 202 | 121.71 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 205 | 121.72 | temperature | 15 | 30 | > th | dose independent | rect. | 23 | 16 |
| 208 | 121.73 | wind | 1 | 270 | < th | dose independent | rect. | 22 | 1 |
| 213 | 121.74 | humidity | 50 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 219 | 121.76 | temperature | 15 | 270 | > th | dose independent | rect. | 19 | 20 |
| 231 | 121.79 | wind | 7 | 1440 | > th | dose dependent | rect. | 1 | 7 |
| 249 | 121.84 | wind | 1 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 262 | 121.89 | temperature | 15 | 270 | > th | dose independent | rect. | 20 | 18 |
| 266 | 121.90 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 273 | 121.93 | radiation | 10 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 288 | 121.96 | temperature | 20 | 43200 | > th | dose independent | rect. | 7 | 11 |
| 291 | 121.97 | temperature | 20 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 295 | 121.97 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 317 | 122.01 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 15 |
| 333 | 122.04 | temperature | 20 | 43200 | < th | dose independent | rect. | 7 | 12 |
| 345 | 122.06 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 22 |
| 349 | 122.07 | wind | 1 | 14400 | < th | dose dependent | rect. | 16 | 9 |
| 354 | 122.08 | temperature | 20 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 360 | 122.09 | wind | 1 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 369 | 122.10 | temperature | 20 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 386 | 122.14 | temperature | 15 | 30 | > th | dose independent | rect. | 19 | 23 |
| 387 | 122.14 | temperature | 15 | 4320 | < th | dose dependent | sin | 1 | NA |
| 388 | 122.14 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 396 | 122.16 | temperature | 15 | 270 | > th | dose independent | rect. | 19 | 7 |
| 397 | 122.16 | temperature | 15 | 270 | > th | dose independent | rect. | 19 | 9 |
| 398 | 122.16 | radiation | 10 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 401 | 122.17 | temperature | 20 | 720 | < th | dose independent | sin | 12 | NA |
| 410 | 122.18 | wind | 1 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 425 | 122.20 | radiation | 40 | 10 | < th | dose dependent | rect. | 23 | 16 |
| 439 | 122.23 | wind | 1 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 475 | 122.28 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 12 |
| 495 | 122.31 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 11 |
| 502 | 122.32 | atmosphere | 1010 | 30 | < th | dose independent | rect. | 23 | 3 |
| 522 | 122.33 | wind | 1 | 270 | < th | dose dependent | rect. | 22 | 1 |
| 531 | 122.34 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 532 | 122.34 | wind | 1 | 43200 | < th | dose dependent | rect. | 14 | 8 |
| 547 | 122.37 | temperature | 15 | 30 | > th | dose independent | rect. | 8 | 18 |
| 551 | 122.38 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 553 | 122.38 | temperature | 15 | 30 | > th | dose independent | rect. | 21 | 5 |
| 569 | 122.40 | temperature | 15 | 4320 | < th | dose dependent | rect. | 4 | 11 |
| 580 | 122.42 | temperature | 20 | 720 | < th | dose independent | rect. | 16 | 23 |
| 594 | 122.44 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 607 | 122.44 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 9 |
| 615 | 122.46 | wind | 1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 622 | 122.47 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 628 | 122.48 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 24 | 3 |
| 634 | 122.49 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 649 | 122.50 | temperature | 20 | 720 | < th | dose independent | rect. | 6 | 23 |
| 680 | 122.54 | humidity | 50 | 270 | > th | dose dependent | rect. | 1 | 9 |
| 695 | 122.56 | temperature | 15 | 10 | > th | dose independent | rect. | 13 | 13 |
| 704 | 122.57 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 705 | 122.57 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 23 |
| 708 | 122.57 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 4 |
| 714 | 122.58 | temperature | 15 | 270 | > th | dose independent | rect. | 17 | 22 |
| 721 | 122.59 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 722 | 122.59 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 734 | 122.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 736 | 122.60 | wind | 1 | 43200 | < th | dose independent | rect. | 12 | 11 |
| 745 | 122.60 | wind | 7 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 753 | 122.61 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 23 |
| 777 | 122.64 | temperature | 15 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 789 | 122.65 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 21 |
| 793 | 122.65 | wind | 1 | 30 | < th | dose dependent | rect. | 14 | 12 |
| 795 | 122.66 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 796 | 122.66 | radiation | 1 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 804 | 122.66 | wind | 9 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 805 | 122.66 | temperature | 20 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 835 | 122.69 | wind | 7 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 860 | 122.70 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 23 |
| 877 | 122.71 | temperature | 20 | 1440 | < th | dose dependent | sin | 23 | NA |
| 878 | 122.71 | radiation | 20 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 890 | 122.72 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 4 |
| 891 | 122.72 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 6 |
| 969 | 122.79 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 971 | 122.79 | radiation | 30 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 986 | 122.79 | radiation | 1 | 43200 | > th | dose dependent | rect. | 4 | 1 |