Os09g0250200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os09g0250200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.66 | 0.464 | 3.2 | 0.618 | 0.542 | -1.22 | -0.138 | 1.88 | 0.183 | 14.8 | 13.36 | 348 | -- | -- |
| 99.82 | 0.465 | 3.24 | 0.313 | 0.543 | -1.19 | 0.132 | -- | 0.103 | 14.9 | 13.09 | 365 | -- | -- |
| 97.71 | 0.46 | 3.2 | 0.6 | 0.538 | -1.22 | -- | 1.78 | 0.179 | 14.9 | 13 | 357 | -- | -- |
| 99.89 | 0.465 | 3.24 | 0.319 | 0.545 | -1.18 | -- | -- | 0.103 | 14.9 | 12.88 | 353 | -- | -- |
| 102.96 | 0.473 | 3.2 | 0.637 | -- | -1.07 | -- | 1.48 | 0.179 | -- | 12.51 | 940 | -- | -- |
| 114.88 | 0.502 | 3.27 | 0.0646 | 0.348 | -- | -0.0299 | -- | -0.0678 | 12.5 | -- | -- | -- | -- |
| 114.88 | 0.502 | 3.27 | 0.0634 | 0.348 | -- | -- | -- | -0.0679 | 12.5 | -- | -- | -- | -- |
| 104.52 | 0.476 | 3.24 | 0.347 | -- | -1.05 | -- | -- | 0.0983 | -- | 13.74 | 946 | -- | -- |
| 102.31 | 0.471 | 3.25 | -- | 0.503 | -1.02 | -- | -- | 0.0499 | 14.7 | 11.1 | 360 | -- | -- |
| 122.48 | 0.517 | 3.28 | 0.0514 | -- | -- | -- | -- | -0.0737 | -- | -- | -- | -- | -- |
| 114.99 | 0.502 | 3.27 | -- | 0.347 | -- | -- | -- | -0.075 | 12.5 | -- | -- | -- | -- |
| 107.32 | 0.482 | 3.25 | -- | -- | -0.918 | -- | -- | 0.0408 | -- | 13.2 | 925 | -- | -- |
| 122.55 | 0.517 | 3.28 | -- | -- | -- | -- | -- | -0.0794 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.63 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 2 | 89.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 11 |
| 4 | 89.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 13 |
| 15 | 90.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 12 |
| 17 | 90.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 17 |
| 28 | 90.47 | temperature | 15 | 720 | > th | dose dependent | sin | 6 | NA |
| 60 | 91.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 6 |
| 67 | 91.18 | temperature | 25 | 720 | < th | dose dependent | sin | 4 | NA |
| 72 | 91.29 | temperature | 10 | 270 | > th | dose dependent | sin | 1 | NA |
| 95 | 91.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 11 |
| 145 | 91.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 191 | 92.53 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 368 | 94.27 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 538 | 95.20 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 584 | 95.34 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 691 | 95.74 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 752 | 95.96 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 831 | 96.24 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 12 |
| 911 | 96.52 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 6 |