Os09g0248900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Isopenicillin N synthase family protein.
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Os09g0248900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Isopenicillin N synthase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.54 | 0.375 | 2.56 | -1.47 | 0.114 | 54.2 | -0.269 | 115 | -0.0215 | 6.74 | 15 | 710 | -- | -- |
| 67.38 | 0.385 | 3.27 | -0.0161 | 0.115 | -0.0362 | -0.3 | -- | -0.0318 | 7.43 | 15 | 710 | -- | -- |
| 63.71 | 0.372 | 2.56 | -1.46 | 0.114 | 54.2 | -- | 115 | -0.0198 | 7.03 | 15.01 | 706 | -- | -- |
| 66.9 | 0.381 | 3.27 | 0.0283 | 0.113 | -0.134 | -- | -- | 0.00248 | 6.76 | 21.4 | 857 | -- | -- |
| 64.39 | 0.374 | 2.56 | -1.46 | -- | 54.2 | -- | 115 | -0.0183 | -- | 15.01 | 706 | -- | -- |
| 67.38 | 0.385 | 3.27 | -0.0176 | 0.115 | -- | -0.298 | -- | -0.0322 | 7.4 | -- | -- | -- | -- |
| 67.62 | 0.385 | 3.27 | -0.0245 | 0.115 | -- | -- | -- | -0.0318 | 7.3 | -- | -- | -- | -- |
| 67.37 | 0.382 | 3.26 | 0.0255 | -- | -0.155 | -- | -- | 0.0137 | -- | 21.6 | 827 | -- | -- |
| 66.9 | 0.381 | 3.26 | -- | 0.0984 | -0.137 | -- | -- | 0.00534 | 6.52 | 21.49 | 839 | -- | -- |
| 68.32 | 0.386 | 3.27 | -0.0225 | -- | -- | -- | -- | -0.0298 | -- | -- | -- | -- | -- |
| 67.64 | 0.385 | 3.27 | -- | 0.115 | -- | -- | -- | -0.029 | 7.31 | -- | -- | -- | -- |
| 67.4 | 0.382 | 3.26 | -- | -- | -0.152 | -- | -- | 0.0094 | -- | 21.45 | 809 | -- | -- |
| 68.34 | 0.386 | 3.27 | -- | -- | -- | -- | -- | -0.0273 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.13 | wind | 9.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 16 | 58.99 | wind | 7.0 | 270 | > th | dose independent | rect. | 7 | 2 |
| 70 | 61.37 | humidity | 90.0 | 270 | > th | dose independent | rect. | 8 | 1 |
| 80 | 61.50 | wind | 7.0 | 30 | > th | dose independent | sin | 6 | NA |
| 85 | 61.53 | wind | 7.0 | 30 | < th | dose independent | sin | 5 | NA |
| 98 | 61.67 | wind | 5.0 | 10 | > th | dose dependent | rect. | 9 | 4 |
| 134 | 61.78 | wind | 7.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 173 | 61.91 | wind | 5.0 | 10 | > th | dose dependent | sin | 5 | NA |
| 183 | 61.94 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 2 | 4 |
| 189 | 61.94 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 5 | 1 |
| 190 | 61.94 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 192 | 61.94 | wind | 5.0 | 10 | > th | dose dependent | rect. | 2 | 11 |
| 193 | 61.95 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 5 | 1 |
| 282 | 62.07 | wind | 7.0 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 327 | 62.13 | wind | 7.0 | 10 | < th | dose independent | rect. | 4 | 15 |
| 547 | 62.46 | wind | 7.0 | 30 | < th | dose dependent | rect. | 3 | 10 |
| 586 | 62.51 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 10 |
| 608 | 62.53 | precipitation | 0.1 | 720 | > th | dose independent | sin | 6 | NA |
| 610 | 62.53 | precipitation | 0.1 | 720 | > th | dose dependent | sin | 6 | NA |
| 611 | 62.53 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 660 | 62.57 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 12 |
| 667 | 62.58 | precipitation | 0.1 | 720 | < th | dose independent | sin | 6 | NA |
| 678 | 62.58 | precipitation | 0.1 | 720 | < th | dose dependent | sin | 6 | NA |
| 733 | 62.63 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 7 | 1 |
| 738 | 62.63 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 7 | 1 |
| 769 | 62.67 | wind | 5.0 | 10 | < th | dose independent | rect. | 3 | 12 |
| 782 | 62.69 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 8 | 1 |
| 787 | 62.70 | wind | 5.0 | 10 | < th | dose independent | rect. | 3 | 10 |
| 794 | 62.71 | radiation | 1.0 | 720 | < th | dose independent | rect. | 24 | 13 |
| 820 | 62.73 | wind | 7.0 | 30 | < th | dose dependent | rect. | 3 | 12 |
| 830 | 62.74 | wind | 7.0 | 720 | < th | dose independent | rect. | 3 | 8 |
| 881 | 62.79 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 23 | 16 |
| 887 | 62.79 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 23 | 16 |
| 925 | 62.82 | wind | 7.0 | 10 | > th | dose independent | rect. | 12 | 1 |
| 950 | 62.83 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 3 | 8 |
| 957 | 62.83 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 3 | 8 |
| 970 | 62.84 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 3 | 8 |
| 977 | 62.85 | temperature | 25.0 | 270 | > th | dose independent | rect. | 20 | 7 |