FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0247500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.51 (0.0449) R2 : 0.73
β1 : -4.66 (0.165) R2dD : 0.581 R2D : 0.142
β2 : 1.67 (0.105) R2dC : 0.139 R2C : 0.00777
β3 : 1.42 (0.148) R2dE : 0.0809 R2E : -0.388
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -2.41 (0.114) R2dN8 : 0.562 R2N8 : 0.00899
σ : 0.785
deviance : 283.98
__
_____
C
peak time of C : 20.9
E
wheather : temperature
threshold : 29.8
memory length : 18220
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
270.18 0.772 5.95 -1.32 1.63 -1.21 1.57 18.2 -1.39 20.8 29.04 3666 -- --
288.96 0.792 6.47 -4.93 1.52 0.993 1.16 -- -2.08 20.9 23.48 18042 -- --
278.4 0.777 5.94 -1.32 1.62 -1.23 -- 18.4 -1.38 20.9 29 3665 -- --
283.98 0.785 6.51 -4.66 1.67 1.42 -- -- -2.41 20.9 29.8 18220 -- --
427.52 0.963 5.92 -1.73 -- -0.955 -- 17.4 -1.48 -- 29.56 3670 -- --
315.44 0.833 6.32 -4.08 1.63 -- 1.69 -- -1.68 21 -- -- -- --
325.24 0.845 6.33 -4.14 1.63 -- -- -- -1.68 21.1 -- -- -- --
427.23 0.963 6.42 -4.69 -- 1.35 -- -- -2.31 -- 30.9 18200 -- --
498.98 1.04 6.04 -- 1.66 -2.69 -- -- -0.42 21.1 6.503 47520 -- --
477.47 1.02 6.28 -4.14 -- -- -- -- -1.69 -- -- -- -- --
777.52 1.3 6.22 -- 1.63 -- -- -- -1.22 20.9 -- -- -- --
657.41 1.19 6 -- -- -2.65 -- -- -0.44 -- 4.947 47520 -- --
929.38 1.42 6.18 -- -- -- -- -- -1.23 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 255.71 humidity 80 14400 > th dose independent rect. 17 1
2 256.14 humidity 80 14400 < th dose independent rect. 17 1
3 256.70 humidity 80 14400 > th dose independent rect. 16 3
4 257.02 humidity 80 14400 < th dose independent rect. 16 3
13 260.41 wind 9 43200 > th dose dependent rect. 19 12
29 262.07 wind 9 43200 > th dose independent rect. 19 12
37 263.04 atmosphere 1000 270 > th dose independent rect. 8 22
40 263.27 wind 7 43200 > th dose dependent rect. 19 1
45 263.48 wind 7 43200 > th dose independent rect. 6 1
49 263.72 wind 9 43200 < th dose independent rect. 19 13
50 263.77 wind 9 43200 < th dose independent rect. 19 10
62 264.09 temperature 30 1440 < th dose independent rect. 9 2
63 264.18 temperature 30 1440 < th dose independent rect. 19 16
65 264.23 temperature 30 1440 < th dose independent rect. 6 5
69 264.48 temperature 30 1440 < th dose independent rect. 4 7
71 264.52 temperature 30 1440 < th dose independent rect. 22 13
77 264.59 humidity 70 14400 > th dose dependent rect. 18 1
79 264.63 temperature 30 1440 < th dose independent rect. 1 10
82 264.69 wind 1 14400 < th dose dependent rect. 2 3
83 264.71 wind 9 43200 < th dose independent rect. 19 6
85 264.73 wind 9 43200 > th dose independent rect. 19 6
89 264.75 atmosphere 1000 270 > th dose independent rect. 9 20
115 265.28 atmosphere 995 43200 > th dose independent rect. 12 1
116 265.30 wind 5 43200 > th dose dependent rect. 6 1
119 265.41 temperature 30 1440 > th dose independent rect. 10 1
120 265.41 humidity 80 14400 < th dose dependent rect. 16 14
124 265.46 wind 1 14400 > th dose independent rect. 2 1
129 265.52 humidity 90 14400 < th dose dependent rect. 16 3
132 265.57 wind 1 14400 < th dose independent rect. 2 4
134 265.62 wind 1 14400 < th dose independent rect. 4 2
150 265.88 humidity 80 14400 < th dose dependent rect. 16 1
173 266.12 humidity 80 14400 < th dose independent sin 17 NA
190 266.28 radiation 1 720 < th dose independent rect. 7 14
201 266.37 wind 1 14400 < th dose dependent rect. 4 1
218 266.58 humidity 80 14400 < th dose dependent sin 13 NA
219 266.59 wind 1 14400 > th dose independent rect. 2 3
247 266.72 wind 7 43200 < th dose independent rect. 6 1
276 266.98 humidity 80 14400 > th dose independent sin 17 NA
384 267.63 humidity 70 14400 > th dose independent rect. 15 16
426 267.82 wind 5 14400 < th dose independent rect. 8 1
436 267.91 wind 7 43200 < th dose independent rect. 19 1
465 268.09 wind 1 14400 < th dose independent rect. 2 1
481 268.18 atmosphere 995 43200 < th dose dependent rect. 14 1
496 268.31 temperature 30 1440 > th dose independent rect. 9 5
502 268.34 temperature 30 14400 > th dose independent rect. 18 15
524 268.48 wind 7 43200 > th dose independent rect. 19 1
562 268.65 radiation 10 14400 > th dose independent rect. 14 1
563 268.65 wind 1 14400 > th dose independent rect. 4 2
583 268.73 temperature 30 1440 < th dose independent sin 9 NA
619 268.89 humidity 70 14400 > th dose independent sin 14 NA
620 268.90 temperature 30 1440 > th dose independent sin 8 NA
769 269.38 radiation 1 720 < th dose dependent rect. 7 11
777 269.45 atmosphere 1000 10 > th dose independent rect. 9 23
807 269.56 wind 5 14400 > th dose independent rect. 8 1
839 269.67 atmosphere 995 43200 < th dose dependent rect. 12 4
857 269.72 radiation 1 720 < th dose independent sin 23 NA
860 269.74 radiation 1 720 < th dose independent rect. 7 20
870 269.78 temperature 25 4320 > th dose independent rect. 1 6
936 270.12 atmosphere 995 43200 < th dose independent rect. 7 8