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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0246700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.59 (0.0433) R2 : 0.165
β1 : -1.45 (0.159) R2dD : 0.159 R2D : 0.121
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.391 (0.0925) R2dN8 : 0.0439 R2N8 : 0.00598
σ : 0.813
deviance : 302.61
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
281.88 0.789 4.6 -1.68 0.0799 -2.26 0.545 -1.5 -0.485 18.4 19.78 7 -- --
282.58 0.783 4.62 -1.7 0.0838 -1.66 0.576 -- -0.495 17.9 20.16 6 -- --
282.59 0.789 4.6 -1.68 0.0834 -2.32 -- -1.63 -0.484 18.2 19.77 6 -- --
283.38 0.784 4.62 -1.7 0.0854 -1.63 -- -- -0.497 18.2 20.33 6 -- --
282.95 0.788 4.6 -1.69 -- -2.35 -- -1.69 -0.486 -- 19.77 6 -- --
300.7 0.813 4.59 -1.45 0.143 -- 0.552 -- -0.39 17 -- -- -- --
301.13 0.813 4.59 -1.45 0.161 -- -- -- -0.387 15.1 -- -- -- --
283.61 0.784 4.62 -1.7 -- -1.5 -- -- -0.508 -- 20.9 6 -- --
352.61 0.875 4.56 -- 0.155 -0.539 -- -- -0.268 15.7 21 6 -- --
302.61 0.813 4.59 -1.45 -- -- -- -- -0.391 -- -- -- -- --
356.17 0.883 4.55 -- 0.19 -- -- -- -0.226 15.2 -- -- -- --
353.52 0.876 4.56 -- -- -0.673 -- -- -0.275 -- 21.3 6 -- --
358.22 0.883 4.55 -- -- -- -- -- -0.23 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 279.25 atmosphere 995.0 14400 > th dose independent rect. 12 1
2 280.87 temperature 30.0 10 < th dose dependent rect. 11 20
3 281.00 temperature 20.0 10 < th dose dependent rect. 2 22
5 281.09 temperature 10.0 30 > th dose dependent rect. 3 23
7 281.23 wind 9.0 4320 < th dose independent rect. 17 4
10 281.46 temperature 20.0 10 < th dose dependent rect. 11 20
16 281.61 wind 9.0 4320 > th dose independent rect. 17 4
18 281.67 temperature 15.0 10 > th dose dependent rect. 12 23
28 281.92 wind 9.0 4320 < th dose independent rect. 17 9
41 282.16 wind 9.0 4320 < th dose independent rect. 17 11
47 282.24 wind 9.0 4320 > th dose independent rect. 17 11
54 282.30 temperature 20.0 10 < th dose dependent rect. 18 23
57 282.35 temperature 20.0 10 < th dose dependent no NA NA
58 282.35 temperature 20.0 10 < th dose dependent rect. 15 22
64 282.38 temperature 20.0 10 < th dose dependent rect. 23 23
70 282.47 wind 9.0 4320 > th dose independent rect. 17 9
79 282.49 temperature 20.0 10 < th dose dependent rect. 21 23
100 282.67 temperature 20.0 10 < th dose dependent rect. 5 23
105 282.73 temperature 20.0 90 > th dose independent rect. 3 23
110 282.78 temperature 20.0 10 < th dose dependent sin 5 NA
113 282.82 wind 9.0 4320 > th dose independent rect. 17 2
114 282.82 humidity 80.0 14400 > th dose dependent rect. 13 1
125 282.92 precipitation 0.1 1440 > th dose independent rect. 17 1
132 283.01 temperature 20.0 90 < th dose dependent rect. 23 23
139 283.08 wind 9.0 4320 > th dose dependent rect. 17 4
147 283.11 precipitation 0.1 1440 < th dose independent rect. 17 1
148 283.11 precipitation 0.1 1440 < th dose dependent rect. 17 1
168 283.30 atmosphere 1015.0 30 < th dose dependent rect. 12 14
172 283.35 wind 7.0 4320 > th dose dependent rect. 17 11
175 283.38 wind 9.0 14400 < th dose independent rect. 20 1
179 283.42 temperature 10.0 720 > th dose dependent rect. 3 6
180 283.43 temperature 20.0 90 < th dose independent rect. 10 20
186 283.46 temperature 30.0 270 < th dose dependent rect. 8 21
191 283.52 temperature 20.0 10 < th dose dependent rect. 18 19
199 283.55 precipitation 0.1 14400 > th dose dependent rect. 20 2
202 283.56 temperature 10.0 720 > th dose dependent rect. 21 18
213 283.63 wind 9.0 14400 > th dose independent rect. 20 1
234 283.76 temperature 20.0 270 < th dose independent rect. 8 20
250 283.82 wind 9.0 14400 > th dose independent rect. 6 5
254 283.83 wind 9.0 14400 < th dose independent rect. 10 1
270 283.91 atmosphere 1005.0 10 > th dose dependent rect. 11 20
276 283.94 humidity 90.0 14400 > th dose dependent rect. 7 1
282 283.95 wind 9.0 43200 > th dose independent rect. 16 17
301 284.10 precipitation 0.1 1440 > th dose dependent rect. 17 1
302 284.10 temperature 10.0 720 > th dose dependent rect. 3 12
304 284.13 wind 9.0 14400 < th dose independent rect. 6 5
306 284.13 atmosphere 1005.0 10 > th dose dependent rect. 11 17
308 284.15 temperature 20.0 30 > th dose independent rect. 12 23
309 284.15 wind 1.0 10 > th dose dependent rect. 11 1
313 284.16 temperature 30.0 720 < th dose dependent rect. 24 13
319 284.19 temperature 20.0 90 < th dose independent rect. 7 9
320 284.19 wind 9.0 4320 < th dose independent rect. 17 16
376 284.36 radiation 20.0 14400 < th dose dependent rect. 2 3
378 284.37 radiation 1.0 4320 < th dose dependent rect. 7 1
383 284.40 temperature 20.0 720 < th dose dependent rect. 2 14
390 284.42 temperature 20.0 90 < th dose independent rect. 2 21
391 284.42 temperature 15.0 720 > th dose dependent rect. 1 14
405 284.48 wind 9.0 43200 > th dose dependent rect. 16 16
416 284.52 temperature 20.0 720 > th dose independent rect. 3 12
430 284.56 wind 9.0 14400 > th dose independent rect. 10 1
431 284.56 wind 5.0 10 > th dose independent rect. 10 2
440 284.58 temperature 20.0 10 < th dose independent rect. 8 9
448 284.59 wind 9.0 14400 > th dose dependent rect. 20 1
456 284.61 wind 3.0 14400 < th dose independent rect. 23 1
469 284.65 radiation 1.0 14400 < th dose dependent rect. 23 1
478 284.71 humidity 90.0 14400 > th dose dependent rect. 22 1
492 284.76 wind 9.0 43200 < th dose independent rect. 16 18
516 284.82 temperature 10.0 720 > th dose dependent rect. 21 13
527 284.86 humidity 90.0 14400 > th dose dependent rect. 4 6
531 284.87 temperature 20.0 720 > th dose independent rect. 22 17
541 284.90 humidity 90.0 14400 > th dose dependent rect. 20 4
547 284.91 temperature 20.0 10 < th dose dependent rect. 3 14
551 284.92 atmosphere 1010.0 30 < th dose independent rect. 4 22
555 284.93 temperature 15.0 720 > th dose dependent sin 4 NA
594 285.02 temperature 20.0 720 < th dose dependent sin 4 NA
626 285.10 temperature 20.0 30 < th dose dependent rect. 7 10
633 285.12 wind 3.0 14400 > th dose independent rect. 23 1
649 285.15 temperature 15.0 720 > th dose dependent rect. 6 3
673 285.21 temperature 30.0 10 < th dose dependent rect. 15 22
675 285.22 precipitation 0.1 14400 < th dose independent rect. 20 2
676 285.22 precipitation 0.1 14400 < th dose dependent rect. 20 2
685 285.23 precipitation 0.1 14400 > th dose independent rect. 20 2
690 285.24 precipitation 0.1 90 > th dose dependent rect. 10 4
708 285.27 temperature 20.0 90 < th dose independent rect. 8 3
712 285.29 radiation 30.0 4320 < th dose independent rect. 2 6
730 285.32 radiation 30.0 4320 < th dose independent rect. 5 3
740 285.33 temperature 30.0 270 < th dose dependent rect. 22 22
768 285.40 radiation 30.0 4320 < th dose independent rect. 22 10
772 285.40 temperature 10.0 720 > th dose dependent rect. 6 9
805 285.47 temperature 20.0 720 > th dose independent sin 4 NA
817 285.49 humidity 90.0 14400 > th dose dependent rect. 15 19
825 285.51 wind 9.0 4320 > th dose dependent sin 13 NA
829 285.51 humidity 90.0 14400 > th dose dependent rect. 18 17
831 285.51 temperature 20.0 90 < th dose dependent rect. 23 18
838 285.52 temperature 20.0 90 < th dose dependent rect. 7 5
874 285.57 wind 9.0 14400 > th dose dependent rect. 10 1
878 285.58 precipitation 0.1 1440 > th dose independent rect. 15 3
879 285.58 temperature 15.0 30 > th dose independent rect. 12 14
883 285.58 atmosphere 1010.0 10 < th dose dependent rect. 18 8
903 285.60 temperature 20.0 10 < th dose dependent sin 22 NA
908 285.61 temperature 20.0 10 < th dose independent rect. 8 5
912 285.62 temperature 10.0 30 > th dose dependent rect. 12 14
919 285.63 temperature 20.0 720 < th dose independent rect. 7 7
953 285.66 precipitation 0.1 14400 > th dose independent rect. 17 1
973 285.69 atmosphere 1010.0 10 < th dose dependent rect. 16 10
976 285.70 wind 9.0 43200 > th dose independent rect. 20 4
999 285.73 atmosphere 995.0 43200 > th dose independent sin 20 NA
1000 285.73 radiation 1.0 4320 < th dose independent rect. 7 1