Os09g0246300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os09g0246300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 268.04 | 0.769 | 4.29 | -1.16 | 0.0976 | -0.755 | -1.03 | -4.09 | -0.707 | 2.7 | 20.82 | 1836 | -- | -- |
| 295.83 | 0.801 | 4.12 | -0.299 | 0.251 | -0.501 | -0.863 | -- | -0.397 | 2.93 | 24.8 | 1021 | -- | -- |
| 269 | 0.764 | 4.28 | -1.29 | 0.142 | -0.583 | -- | -3.9 | -0.728 | 2.96 | 21.4 | 2324 | -- | -- |
| 298.71 | 0.805 | 4.12 | -0.23 | 0.255 | -0.505 | -- | -- | -0.395 | 2.56 | 24.8 | 1017 | -- | -- |
| 269.79 | 0.765 | 4.3 | -1.33 | -- | -0.598 | -- | -4.07 | -0.742 | -- | 21.4 | 2273 | -- | -- |
| 304.64 | 0.818 | 4.17 | -0.421 | 0.0884 | -- | -0.953 | -- | -0.59 | 1.97 | -- | -- | -- | -- |
| 307.62 | 0.821 | 4.17 | -0.394 | 0.135 | -- | -- | -- | -0.586 | 5 | -- | -- | -- | -- |
| 300.55 | 0.807 | 4.12 | -0.203 | -- | -0.529 | -- | -- | -0.409 | -- | 24.8 | 1897 | -- | -- |
| 300.07 | 0.807 | 4.13 | -- | 0.237 | -0.511 | -- | -- | -0.387 | 2.34 | 24.79 | 1004 | -- | -- |
| 308.58 | 0.821 | 4.17 | -0.389 | -- | -- | -- | -- | -0.582 | -- | -- | -- | -- | -- |
| 311.7 | 0.826 | 4.16 | -- | 0.128 | -- | -- | -- | -0.542 | 5.1 | -- | -- | -- | -- |
| 301.54 | 0.809 | 4.12 | -- | -- | -0.584 | -- | -- | -0.372 | -- | 24.7 | 1888 | -- | -- |
| 312.57 | 0.825 | 4.16 | -- | -- | -- | -- | -- | -0.539 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 256.90 | wind | 3 | 14400 | < th | dose dependent | rect. | 6 | 6 |
| 7 | 258.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 18 | 259.36 | wind | 3 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 27 | 259.66 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 58 | 260.89 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 13 |
| 61 | 261.02 | wind | 3 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 63 | 261.05 | wind | 3 | 14400 | < th | dose independent | rect. | 22 | 17 |
| 64 | 261.06 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 72 | 261.25 | wind | 3 | 14400 | < th | dose dependent | rect. | 8 | 3 |
| 81 | 261.48 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 88 | 261.63 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 13 |
| 90 | 261.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 100 | 261.91 | wind | 3 | 14400 | < th | dose independent | sin | 5 | NA |
| 103 | 261.98 | wind | 3 | 14400 | > th | dose independent | rect. | 22 | 16 |
| 114 | 262.20 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 19 |
| 139 | 262.75 | wind | 3 | 14400 | > th | dose independent | sin | 5 | NA |
| 157 | 262.98 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 161 | 263.05 | wind | 3 | 14400 | < th | dose dependent | rect. | 19 | 18 |
| 168 | 263.13 | wind | 3 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 188 | 263.45 | wind | 3 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 189 | 263.48 | wind | 3 | 14400 | > th | dose independent | rect. | 19 | 19 |
| 190 | 263.48 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 17 |
| 200 | 263.60 | wind | 3 | 14400 | < th | dose dependent | sin | 4 | NA |
| 206 | 263.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 2 |
| 229 | 264.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 2 |
| 307 | 264.82 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 329 | 264.95 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 371 | 265.37 | wind | 3 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 376 | 265.40 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 417 | 265.96 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 436 | 266.18 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 470 | 266.43 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 531 | 267.03 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 537 | 267.05 | wind | 3 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 551 | 267.13 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 585 | 267.55 | wind | 3 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 626 | 267.89 | wind | 3 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 631 | 267.93 | wind | 3 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 721 | 268.48 | wind | 1 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 912 | 269.72 | wind | 3 | 14400 | < th | dose dependent | rect. | 3 | 23 |
| 917 | 269.75 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 9 |
| 940 | 269.85 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 943 | 269.86 | wind | 3 | 14400 | < th | dose dependent | no | NA | NA |
| 945 | 269.87 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 21 | 7 |
| 946 | 269.88 | wind | 3 | 14400 | < th | dose dependent | rect. | 8 | 23 |
| 956 | 269.94 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 23 |
| 969 | 270.00 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 23 |