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Os09g0246200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RpoT1 (T7 bacteriophage-type single subunit RNA polymerase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.52 (0.0226) R2 : 0.848
β1 : 1.48 (0.0827) R2dD : 0.11 R2D : 0.0746
β2 : 1.8 (0.0691) R2dC : 0.326 R2C : 0.571
β3 : -1.53 (0.0809) R2dE : 0.176 R2E : 0.417
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.393 (0.0487) R2dN8 : 0.0299 R2N8 : -0.017
σ : 0.422
deviance : 82.21
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_____
C
peak time of C : 16
E
wheather : wind
threshold : 4.668
memory length : 263
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.9
open length of G : 3.95

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
80.67 0.422 7.52 1.45 1.8 -1.53 0.663 -0.206 0.39 16 5.323 259 2.96 4.02
80.7 0.418 7.52 1.45 1.8 -1.53 0.742 -- 0.387 16.1 5.301 258 2.95 3.98
81.65 0.421 7.52 1.47 1.81 -1.53 -- -0.485 0.4 16 5 260 2.93 4.01
82.21 0.422 7.52 1.48 1.8 -1.53 -- -- 0.393 16 4.668 263 2.9 3.95
157.93 0.585 7.44 1.82 -- -2.2 -- -0.0836 0.504 -- 5.407 199 1.42 6.42
121.58 0.517 7.58 1.43 2.64 -- 0.926 -- 0.265 16.9 -- -- -- --
123.78 0.521 7.57 1.43 2.65 -- -- -- 0.269 16.9 -- -- -- --
147.32 0.565 7.46 1.46 -- -2.37 -- -- 0.476 -- 5.712 255 0.391 6.87
138.82 0.549 7.56 -- 1.84 -1.47 -- -- 0.222 16.1 5.8 228 3.15 4.23
493.77 1.04 7.55 1.33 -- -- -- -- 0.201 -- -- -- -- --
177.57 0.623 7.61 -- 2.62 -- -- -- 0.11 16.9 -- -- -- --
204.18 0.666 7.53 -- -- -2.21 -- -- 0.268 -- 6.2 274 0.142 7.15
540.53 1.09 7.58 -- -- -- -- -- 0.0534 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 81.19 wind 5.0 270 < th dose independent rect. 3 4
2 81.19 wind 9.0 270 < th dose independent rect. 7 20
3 81.67 radiation 30.0 270 < th dose dependent rect. 3 4
6 81.77 precipitation 0.1 270 < th dose independent rect. 3 4
7 81.77 precipitation 0.1 270 < th dose dependent rect. 3 4
11 82.08 radiation 10.0 270 < th dose independent rect. 3 4
13 82.19 atmosphere 1010.0 270 < th dose independent rect. 3 4
15 82.31 radiation 20.0 270 < th dose independent rect. 2 6
16 82.32 humidity 70.0 270 > th dose independent rect. 3 4
18 82.36 temperature 10.0 270 > th dose independent rect. 3 4
20 82.36 temperature 30.0 270 < th dose independent rect. 3 4
21 82.36 humidity 50.0 270 > th dose independent rect. 3 4
23 82.36 atmosphere 995.0 270 > th dose independent rect. 3 4
27 82.36 temperature 10.0 270 > th dose independent rect. 7 20
31 82.95 wind 9.0 270 < th dose independent rect. 8 18
35 83.20 precipitation 0.1 270 < th dose independent rect. 7 20
36 83.20 precipitation 0.1 270 < th dose dependent rect. 7 20
40 83.46 precipitation 0.1 270 < th dose independent rect. 2 6
41 83.46 precipitation 0.1 270 < th dose dependent rect. 2 6
44 83.56 atmosphere 1010.0 270 < th dose independent rect. 2 6
56 84.07 temperature 10.0 270 > th dose independent rect. 2 6
58 84.07 temperature 30.0 270 < th dose independent rect. 2 6
59 84.07 humidity 50.0 270 > th dose independent rect. 2 6
61 84.07 atmosphere 995.0 270 > th dose independent rect. 2 6
63 84.07 temperature 10.0 270 > th dose independent rect. 8 18
67 84.17 wind 9.0 270 < th dose dependent rect. 3 4
68 84.22 wind 1.0 270 > th dose independent rect. 3 4
70 84.34 temperature 15.0 270 > th dose independent rect. 15 16
91 84.75 precipitation 0.1 270 < th dose independent rect. 8 18
92 84.75 precipitation 0.1 270 < th dose dependent rect. 8 18
111 85.00 wind 1.0 270 > th dose independent rect. 2 6
121 85.35 wind 5.0 270 < th dose independent rect. 4 1
131 85.64 radiation 40.0 270 < th dose dependent rect. 15 16
134 85.68 humidity 50.0 270 > th dose dependent rect. 3 4
135 85.69 wind 9.0 270 < th dose independent rect. 7 8
140 85.83 radiation 30.0 270 < th dose independent rect. 15 16
152 85.94 atmosphere 995.0 270 > th dose independent rect. 7 20
153 85.96 precipitation 0.1 270 < th dose independent rect. 7 8
154 85.96 precipitation 0.1 270 < th dose dependent rect. 7 8
155 85.99 precipitation 0.1 270 < th dose independent rect. 3 16
156 85.99 precipitation 0.1 270 < th dose dependent rect. 3 16
158 86.01 wind 9.0 270 < th dose independent rect. 20 7
163 86.06 temperature 15.0 270 > th dose independent rect. 3 17
166 86.09 temperature 10.0 270 > th dose independent rect. 20 7
167 86.09 temperature 30.0 270 < th dose independent rect. 20 7
168 86.09 humidity 50.0 270 > th dose independent rect. 20 7
171 86.09 atmosphere 995.0 270 > th dose independent rect. 20 7
172 86.09 radiation 1.0 270 < th dose independent rect. 20 7
178 86.09 atmosphere 1015.0 270 < th dose independent rect. 3 17
179 86.09 radiation 1.0 270 < th dose dependent rect. 20 7
185 86.13 temperature 10.0 270 > th dose independent rect. 7 8
186 86.13 atmosphere 1015.0 270 < th dose independent rect. 7 8
194 86.23 temperature 10.0 270 > th dose dependent rect. 3 4
217 86.33 atmosphere 995.0 90 > th dose dependent rect. 4 4
221 86.38 precipitation 0.1 270 < th dose independent rect. 4 1
223 86.38 precipitation 0.1 270 < th dose dependent rect. 4 1
224 86.39 precipitation 0.1 270 < th dose independent rect. 20 7
225 86.39 atmosphere 995.0 270 > th dose independent rect. 7 8
226 86.39 precipitation 0.1 270 < th dose dependent rect. 20 7
230 86.45 radiation 1.0 270 < th dose dependent rect. 4 1
241 86.65 temperature 10.0 270 > th dose independent rect. 4 1
243 86.65 temperature 30.0 270 < th dose independent rect. 4 1
244 86.65 humidity 50.0 270 > th dose independent rect. 4 1
247 86.65 atmosphere 995.0 270 > th dose independent rect. 4 1
250 86.65 radiation 20.0 270 < th dose independent rect. 4 1
254 86.65 temperature 10.0 270 > th dose independent rect. 5 23
257 86.68 radiation 40.0 270 < th dose dependent rect. 4 1
287 86.76 precipitation 0.1 270 < th dose independent rect. 15 16
290 86.76 precipitation 0.1 270 < th dose dependent rect. 15 16
293 86.81 wind 9.0 270 < th dose dependent rect. 7 20
295 86.85 radiation 1.0 270 < th dose independent rect. 4 1
297 86.91 humidity 50.0 270 > th dose dependent rect. 20 7
309 87.07 wind 9.0 270 < th dose dependent rect. 8 18
322 87.27 wind 9.0 270 < th dose independent rect. 15 16
328 87.40 atmosphere 995.0 270 > th dose independent rect. 8 18
339 87.52 atmosphere 995.0 270 > th dose dependent rect. 21 5
355 87.68 wind 9.0 10 < th dose independent rect. 9 19
386 87.93 wind 9.0 270 < th dose independent rect. 3 17
388 87.96 atmosphere 1010.0 270 < th dose independent rect. 13 8
392 87.99 precipitation 0.1 10 < th dose independent rect. 4 5
400 87.99 precipitation 0.1 10 < th dose dependent rect. 4 5
401 87.99 humidity 50.0 270 > th dose dependent rect. 2 6
403 88.03 atmosphere 1015.0 270 < th dose independent rect. 15 16
404 88.06 wind 7.0 10 < th dose independent rect. 4 5
458 88.27 radiation 1.0 270 > th dose independent rect. 7 8
460 88.36 temperature 15.0 270 > th dose independent rect. 13 9
463 88.37 atmosphere 1000.0 270 > th dose independent rect. 21 5
465 88.39 atmosphere 995.0 270 > th dose dependent rect. 4 1
466 88.40 temperature 15.0 270 > th dose independent rect. 2 19
479 88.53 atmosphere 1015.0 270 < th dose independent rect. 2 19
492 88.62 humidity 50.0 270 > th dose dependent rect. 4 1
496 88.65 atmosphere 995.0 270 > th dose independent rect. 16 15
503 88.72 radiation 10.0 270 < th dose dependent rect. 3 16
508 88.78 humidity 50.0 90 > th dose independent rect. 17 15
533 88.92 wind 9.0 270 < th dose dependent rect. 7 8
549 89.02 temperature 30.0 270 < th dose dependent rect. 4 1
600 89.16 atmosphere 1015.0 90 < th dose independent rect. 17 15
613 89.35 atmosphere 995.0 270 > th dose independent rect. 3 17
656 89.53 atmosphere 995.0 270 > th dose dependent rect. 22 3
720 89.85 radiation 1.0 90 > th dose independent rect. 18 14
728 89.88 wind 9.0 270 < th dose independent rect. 21 16
746 89.96 radiation 40.0 90 < th dose independent rect. 4 18
788 90.13 radiation 1.0 90 > th dose independent rect. 4 4
801 90.15 humidity 50.0 270 > th dose independent rect. 7 8
804 90.16 atmosphere 1000.0 270 > th dose independent rect. 22 3
814 90.24 temperature 10.0 270 > th dose independent rect. 21 16
815 90.24 atmosphere 995.0 270 > th dose independent rect. 21 16
825 90.32 atmosphere 995.0 90 > th dose dependent rect. 8 20
829 90.39 humidity 50.0 270 > th dose independent rect. 15 16
847 90.46 wind 1.0 270 > th dose independent rect. 15 16
864 90.57 wind 9.0 270 < th dose dependent rect. 20 6
883 90.66 wind 1.0 270 > th dose independent rect. 3 17
884 90.66 temperature 30.0 270 < th dose dependent rect. 3 3
888 90.68 humidity 60.0 270 > th dose dependent rect. 22 3
890 90.70 temperature 15.0 10 > th dose independent rect. 16 17
924 90.81 wind 1.0 270 > th dose independent rect. 7 8
925 90.81 radiation 1.0 270 < th dose independent rect. 3 16
928 90.83 humidity 50.0 270 > th dose independent rect. 7 20
975 91.04 radiation 40.0 90 < th dose dependent rect. 4 18