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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0246100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.7 (0.031) R2 : 0.571
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.94 (0.119) R2dE : 0.609 R2E : 0.526
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.39 (0.0669) R2dN8 : 0.045 R2N8 : -0.0377
σ : 0.576
deviance : 152.15
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 19.82
memory length : 18
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
135.66 0.547 4.68 -0.526 0.485 3.41 -0.2 1.03 -0.391 11.8 8.929 97 -- --
136.43 0.544 4.71 -0.641 0.464 3.45 -0.0684 -- -0.433 11.8 8.346 99 -- --
135.79 0.543 4.69 -0.541 0.492 3.41 -- 0.921 -0.395 11.7 8.466 100 -- --
136.33 0.544 4.71 -0.68 0.504 3.44 -- -- -0.431 11.7 14.47 105 -- --
142.42 0.559 4.71 -0.593 -- 3.84 -- 0.993 -0.461 -- 8.466 100 -- --
251.14 0.743 4.6 0.0123 1.33 -- 0.395 -- 0.0461 14.1 -- -- -- --
251.73 0.743 4.6 0.0239 1.34 -- -- -- 0.0484 14.1 -- -- -- --
142.99 0.559 4.73 -0.712 -- 3.53 -- -- -0.497 -- 16.38 53 -- --
147.03 0.565 4.68 -- 0.524 2.91 -- -- -0.318 12.4 15.88 99 -- --
358.52 0.885 4.61 -0.0319 -- -- -- -- 0.0167 -- -- -- -- --
251.74 0.742 4.6 -- 1.33 -- -- -- 0.0458 14.1 -- -- -- --
152.15 0.576 4.7 -- -- 2.94 -- -- -0.39 -- 19.82 18 -- --
358.55 0.884 4.61 -- -- -- -- -- 0.0203 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 127.15 temperature 30 270 < th dose dependent rect. 22 22
7 132.38 temperature 10 270 > th dose dependent rect. 4 23
15 135.34 temperature 15 270 > th dose dependent rect. 16 23
22 135.79 temperature 10 90 > th dose dependent no NA NA
24 136.09 temperature 30 90 < th dose dependent no NA NA
27 136.54 temperature 30 30 < th dose dependent rect. 9 23
30 136.79 temperature 10 10 > th dose dependent no NA NA
32 136.91 temperature 30 90 < th dose dependent rect. 17 23
33 137.27 temperature 30 90 < th dose dependent rect. 13 23
39 137.64 temperature 20 10 > th dose dependent rect. 21 23
44 138.01 temperature 30 90 < th dose dependent rect. 15 23
46 138.43 temperature 30 30 < th dose dependent rect. 11 23
52 138.97 temperature 20 10 > th dose dependent rect. 7 23
55 139.15 temperature 30 10 < th dose dependent no NA NA
64 139.89 temperature 30 10 < th dose dependent rect. 17 23
66 139.96 temperature 20 90 > th dose dependent rect. 1 23
74 140.49 temperature 20 10 > th dose dependent rect. 1 23
82 141.29 temperature 20 10 > th dose dependent rect. 23 23
89 141.95 temperature 30 10 < th dose dependent rect. 1 23
94 142.08 temperature 20 10 > th dose dependent rect. 3 23
126 144.20 temperature 30 10 < th dose dependent rect. 19 23
127 144.23 temperature 30 10 < th dose dependent rect. 23 23
133 144.47 temperature 30 10 < th dose dependent rect. 3 23
191 146.71 temperature 10 90 > th dose dependent sin 3 NA
219 147.60 temperature 15 720 > th dose dependent rect. 21 20
224 147.78 temperature 20 720 > th dose dependent rect. 21 16
252 148.49 temperature 20 720 > th dose dependent rect. 21 18
297 149.51 temperature 10 720 > th dose dependent rect. 21 16
345 150.57 temperature 30 90 < th dose dependent sin 3 NA
399 151.26 temperature 30 10 < th dose dependent rect. 7 23
402 151.27 temperature 20 10 > th dose dependent rect. 17 23
433 151.81 temperature 30 720 < th dose dependent rect. 19 19
458 152.38 temperature 30 270 < th dose dependent sin 6 NA
543 153.43 temperature 30 10 < th dose dependent sin 1 NA
590 154.09 temperature 20 10 > th dose dependent rect. 15 23
921 157.45 temperature 10 720 > th dose dependent rect. 10 23
933 157.52 temperature 10 1440 > th dose dependent rect. 3 9
934 157.52 temperature 10 1440 > th dose dependent rect. 1 12
947 157.54 temperature 30 1440 < th dose dependent rect. 3 9