Os09g0242600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0242600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.87 | 0.348 | 8.53 | 0.484 | 0.168 | 1.22 | -0.547 | -0.374 | 0.697 | 3.62 | 21.23 | 1002 | -- | -- |
| 55.24 | 0.346 | 8.53 | 0.567 | 0.16 | 1.25 | -0.574 | -- | 0.706 | 3.3 | 21.3 | 1009 | -- | -- |
| 55.76 | 0.348 | 8.53 | 0.474 | 0.162 | 1.23 | -- | -0.437 | 0.692 | 3.62 | 21.2 | 1001 | -- | -- |
| 56.33 | 0.35 | 8.52 | 0.582 | 0.167 | 1.26 | -- | -- | 0.717 | 3.7 | 21.24 | 1001 | -- | -- |
| 57.24 | 0.352 | 8.54 | 0.463 | -- | 1.25 | -- | -0.472 | 0.69 | -- | 21.23 | 1001 | -- | -- |
| 104.09 | 0.478 | 8.45 | 1.05 | 0.298 | -- | -0.715 | -- | 1.06 | 1.91 | -- | -- | -- | -- |
| 106.01 | 0.482 | 8.45 | 1.08 | 0.297 | -- | -- | -- | 1.06 | 1.48 | -- | -- | -- | -- |
| 57.83 | 0.354 | 8.52 | 0.579 | -- | 1.28 | -- | -- | 0.715 | -- | 21.26 | 1003 | -- | -- |
| 63.83 | 0.372 | 8.54 | -- | 0.163 | 1.45 | -- | -- | 0.618 | 3.89 | 21.14 | 1026 | -- | -- |
| 111.42 | 0.493 | 8.44 | 1.09 | -- | -- | -- | -- | 1.07 | -- | -- | -- | -- | -- |
| 136.57 | 0.547 | 8.47 | -- | 0.316 | -- | -- | -- | 0.94 | 1.6 | -- | -- | -- | -- |
| 65.03 | 0.376 | 8.54 | -- | -- | 1.5 | -- | -- | 0.621 | -- | 21.06 | 1070 | -- | -- |
| 142.69 | 0.558 | 8.47 | -- | -- | -- | -- | -- | 0.945 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.58 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 5 | 59.14 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 12 | 59.22 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 20 | 59.36 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 27 | 59.46 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 31 | 59.51 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 49 | 59.73 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 11 |
| 52 | 59.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 23 |
| 68 | 59.85 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 85 | 60.04 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 92 | 60.10 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 98 | 60.15 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 113 | 60.29 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 16 |
| 227 | 61.00 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 236 | 61.06 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 3 |
| 323 | 61.45 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 404 | 61.93 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 9 |
| 417 | 62.00 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 22 |
| 461 | 62.20 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |
| 472 | 62.25 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 22 |
| 511 | 62.39 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 530 | 62.44 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 23 |
| 532 | 62.45 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 22 |
| 536 | 62.46 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 22 |
| 540 | 62.47 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 23 |
| 577 | 62.61 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 592 | 62.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 13 |
| 619 | 62.74 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 23 |
| 650 | 62.81 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 17 |
| 651 | 62.82 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 671 | 62.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 706 | 62.94 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 713 | 62.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 16 |
| 768 | 63.05 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 14 |
| 813 | 63.13 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 820 | 63.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 886 | 63.27 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 927 | 63.33 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |