Os09g0241200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0241200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.47 | 0.347 | 8.84 | -0.409 | 1.25 | 0.196 | -0.899 | -2.89 | -0.259 | 20.6 | 10 | 4320 | -- | -- |
| 65.98 | 0.378 | 8.85 | -0.481 | 1.25 | 0.325 | -0.808 | -- | -0.288 | 20.6 | 9.995 | 33259 | -- | -- |
| 57.41 | 0.353 | 8.84 | -0.411 | 1.25 | 0.203 | -- | -2.96 | -0.258 | 20.6 | 9.99 | 4463 | -- | -- |
| 64.81 | 0.375 | 8.79 | -0.535 | 1.24 | 0.513 | -- | -- | -0.288 | 20.7 | 19.52 | 47520 | -- | -- |
| 120.63 | 0.514 | 8.76 | -0.389 | -- | 0.585 | -- | -0.715 | -0.299 | -- | 9.983 | 4510 | -- | -- |
| 67.51 | 0.385 | 8.77 | -0.297 | 1.25 | -- | -0.871 | -- | -0.227 | 20.7 | -- | -- | -- | -- |
| 70 | 0.392 | 8.77 | -0.269 | 1.25 | -- | -- | -- | -0.227 | 20.7 | -- | -- | -- | -- |
| 123.87 | 0.521 | 8.75 | -0.33 | -- | 0.581 | -- | -- | -0.285 | -- | 9.914 | 4504 | -- | -- |
| 69.5 | 0.388 | 8.77 | -- | 1.25 | 0.314 | -- | -- | -0.198 | 20.6 | 40 | 47520 | -- | -- |
| 158.46 | 0.588 | 8.74 | -0.271 | -- | -- | -- | -- | -0.237 | -- | -- | -- | -- | -- |
| 71.9 | 0.397 | 8.77 | -- | 1.25 | -- | -- | -- | -0.197 | 20.7 | -- | -- | -- | -- |
| 126.73 | 0.526 | 8.74 | -- | -- | 0.573 | -- | -- | -0.248 | -- | 9.914 | 4504 | -- | -- |
| 160.4 | 0.591 | 8.73 | -- | -- | -- | -- | -- | -0.207 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.42 | temperature | 20 | 270 | > th | dose dependent | sin | 9 | NA |
| 3 | 51.06 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 11 |
| 4 | 51.32 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 17 | 51.95 | temperature | 15 | 14400 | > th | dose independent | rect. | 9 | 7 |
| 21 | 52.06 | temperature | 15 | 14400 | < th | dose dependent | rect. | 3 | 19 |
| 23 | 52.08 | temperature | 15 | 14400 | < th | dose independent | rect. | 9 | 7 |
| 26 | 52.09 | temperature | 15 | 14400 | < th | dose dependent | rect. | 4 | 15 |
| 34 | 52.13 | humidity | 50 | 43200 | < th | dose dependent | rect. | 18 | 16 |
| 35 | 52.14 | temperature | 15 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 39 | 52.16 | temperature | 15 | 14400 | < th | dose independent | rect. | 6 | 9 |
| 52 | 52.22 | temperature | 15 | 14400 | < th | dose dependent | sin | 1 | NA |
| 74 | 52.35 | temperature | 15 | 14400 | < th | dose dependent | sin | 18 | NA |
| 81 | 52.37 | temperature | 15 | 14400 | < th | dose dependent | rect. | 17 | 7 |
| 89 | 52.40 | temperature | 15 | 14400 | < th | dose independent | rect. | 11 | 3 |
| 95 | 52.42 | temperature | 15 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 101 | 52.43 | temperature | 15 | 14400 | < th | dose dependent | rect. | 9 | 15 |
| 108 | 52.46 | temperature | 15 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 112 | 52.47 | temperature | 15 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 133 | 52.52 | temperature | 15 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 138 | 52.54 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 5 |
| 161 | 52.58 | temperature | 15 | 43200 | < th | dose dependent | sin | 14 | NA |
| 185 | 52.61 | temperature | 15 | 14400 | < th | dose independent | rect. | 9 | 14 |
| 232 | 52.62 | temperature | 15 | 43200 | < th | dose dependent | rect. | 19 | 14 |
| 254 | 52.62 | temperature | 15 | 43200 | < th | dose dependent | rect. | 20 | 20 |
| 337 | 52.64 | temperature | 15 | 43200 | < th | dose dependent | no | NA | NA |
| 441 | 52.71 | temperature | 15 | 14400 | > th | dose independent | rect. | 9 | 14 |
| 448 | 52.71 | temperature | 15 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 462 | 52.73 | temperature | 15 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 512 | 52.76 | temperature | 15 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 536 | 52.78 | temperature | 15 | 14400 | < th | dose independent | rect. | 6 | 17 |
| 593 | 52.82 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 620 | 52.85 | temperature | 15 | 14400 | < th | dose dependent | rect. | 10 | 4 |
| 623 | 52.85 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 10 |
| 629 | 52.86 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 633 | 52.86 | temperature | 15 | 14400 | < th | dose independent | rect. | 6 | 19 |
| 643 | 52.87 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 663 | 52.89 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 766 | 52.98 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 12 |
| 848 | 53.03 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 897 | 53.06 | radiation | 10 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 902 | 53.06 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 924 | 53.07 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 944 | 53.07 | temperature | 15 | 43200 | > th | dose independent | rect. | 11 | 15 |
| 950 | 53.07 | temperature | 15 | 43200 | < th | dose dependent | rect. | 10 | 1 |