Os09g0240500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Sulfate transporter 4.1, chloroplast precursor (AST82).
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Os09g0240500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Sulfate transporter 4.1, chloroplast precursor (AST82).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.94 | 0.325 | 10.1 | -0.496 | 2.86 | -0.978 | 0.761 | 0.514 | -0.205 | 5.71 | 18.65 | 4120 | -- | -- |
| 48.05 | 0.323 | 10.1 | -0.606 | 2.86 | -1.02 | 0.782 | -- | -0.233 | 5.7 | 17.49 | 4134 | -- | -- |
| 49.33 | 0.327 | 10.1 | -0.496 | 2.86 | -0.995 | -- | 0.456 | -0.208 | 5.69 | 17.99 | 4133 | -- | -- |
| 49.49 | 0.328 | 10.1 | -0.607 | 2.86 | -1.02 | -- | -- | -0.239 | 5.69 | 17.4 | 4106 | -- | -- |
| 213.17 | 0.68 | 10.1 | -0.14 | -- | -3.16 | -- | 2.17 | 0.0139 | -- | 24.34 | 391 | -- | -- |
| 70.32 | 0.393 | 10.2 | -1.08 | 2.82 | -- | 0.799 | -- | -0.448 | 5.8 | -- | -- | -- | -- |
| 71.87 | 0.397 | 10.2 | -1.08 | 2.82 | -- | -- | -- | -0.452 | 5.78 | -- | -- | -- | -- |
| 220.2 | 0.691 | 10.1 | -0.484 | -- | -3.02 | -- | -- | -0.102 | -- | 24.4 | 388 | -- | -- |
| 55.33 | 0.346 | 10.1 | -- | 2.83 | -1.12 | -- | -- | -0.0124 | 5.75 | 13.89 | 24991 | -- | -- |
| 485.62 | 1.03 | 10.2 | -0.991 | -- | -- | -- | -- | -0.385 | -- | -- | -- | -- | -- |
| 102.56 | 0.474 | 10.1 | -- | 2.81 | -- | -- | -- | -0.332 | 5.8 | -- | -- | -- | -- |
| 226.17 | 0.7 | 10.1 | -- | -- | -3.09 | -- | -- | -0.0318 | -- | 24.3 | 388 | -- | -- |
| 511.55 | 1.06 | 10.2 | -- | -- | -- | -- | -- | -0.275 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.12 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 22 |
| 30 | 46.91 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 31 | 46.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 35 | 47.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 20 |
| 42 | 47.15 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 44 | 47.17 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 4 |
| 58 | 47.28 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 4 |
| 61 | 47.31 | temperature | 20 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 65 | 47.32 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 12 |
| 66 | 47.34 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 82 | 47.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 12 |
| 87 | 47.50 | temperature | 20 | 4320 | < th | dose independent | rect. | 23 | 2 |
| 104 | 47.65 | temperature | 20 | 4320 | > th | dose dependent | rect. | 16 | 11 |
| 140 | 47.77 | temperature | 20 | 4320 | > th | dose dependent | rect. | 15 | 16 |
| 142 | 47.78 | temperature | 20 | 4320 | > th | dose dependent | sin | 14 | NA |
| 147 | 47.79 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 224 | 47.96 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 282 | 48.03 | temperature | 20 | 1440 | > th | dose dependent | sin | 8 | NA |
| 387 | 48.13 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 22 |
| 393 | 48.14 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 403 | 48.14 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 21 |
| 429 | 48.16 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 11 |
| 439 | 48.16 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 23 |
| 462 | 48.18 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 23 |
| 467 | 48.18 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 484 | 48.20 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 5 |
| 611 | 48.27 | temperature | 30 | 4320 | < th | dose dependent | sin | 13 | NA |
| 700 | 48.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 19 |
| 746 | 48.34 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 762 | 48.34 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 814 | 48.38 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 2 |
| 993 | 48.47 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 23 |