Os09g0135200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0135200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 231.37 | 0.715 | 3.37 | 0.113 | 0.288 | -0.889 | 0.16 | 0.521 | -0.0774 | 9.31 | 25.3 | 4245 | -- | -- |
| 231.57 | 0.709 | 3.39 | -0.012 | 0.302 | -0.855 | 0.172 | -- | -0.113 | 9.31 | 25.4 | 4252 | -- | -- |
| 231.46 | 0.709 | 3.37 | 0.118 | 0.288 | -0.89 | -- | 0.515 | -0.0773 | 9.3 | 25.3 | 4245 | -- | -- |
| 231.63 | 0.709 | 3.39 | -0.0194 | 0.289 | -0.859 | -- | -- | -0.116 | 9.31 | 25.4 | 4244 | -- | -- |
| 234.47 | 0.713 | 3.36 | 0.174 | -- | -0.934 | -- | 0.664 | -0.0181 | -- | 25.11 | 3596 | -- | -- |
| 249.89 | 0.741 | 3.42 | -0.346 | 0.332 | -- | 0.165 | -- | -0.277 | 10 | -- | -- | -- | -- |
| 249.99 | 0.74 | 3.42 | -0.34 | 0.331 | -- | -- | -- | -0.277 | 10 | -- | -- | -- | -- |
| 234.44 | 0.713 | 3.39 | -0.00126 | -- | -0.918 | -- | -- | -0.0764 | -- | 25.2 | 3657 | -- | -- |
| 231.64 | 0.709 | 3.39 | -- | 0.289 | -0.865 | -- | -- | -0.113 | 9.31 | 25.36 | 4245 | -- | -- |
| 256.61 | 0.749 | 3.43 | -0.344 | -- | -- | -- | -- | -0.277 | -- | -- | -- | -- | -- |
| 253.03 | 0.744 | 3.42 | -- | 0.333 | -- | -- | -- | -0.239 | 10.1 | -- | -- | -- | -- |
| 234.44 | 0.713 | 3.39 | -- | -- | -0.918 | -- | -- | -0.0762 | -- | 25.19 | 3657 | -- | -- |
| 259.73 | 0.752 | 3.43 | -- | -- | -- | -- | -- | -0.239 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 228.32 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 4 | 228.77 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 8 | 21 |
| 5 | 228.84 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 6 | 229.03 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 19 | 16 |
| 20 | 229.55 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 19 | 17 |
| 26 | 229.63 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 49 | 229.97 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 59 | 230.05 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 90 | 230.33 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 101 | 230.41 | temperature | 25.0 | 1440 | < th | dose independent | sin | 10 | NA |
| 109 | 230.46 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 110 | 230.46 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 18 | 9 |
| 113 | 230.47 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 123 | 230.52 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 19 | 7 |
| 144 | 230.65 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 18 | 9 |
| 158 | 230.69 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 163 | 230.72 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 19 | 4 |
| 164 | 230.72 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 187 | 230.87 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 19 | 4 |
| 194 | 230.89 | temperature | 25.0 | 1440 | > th | dose independent | sin | 10 | NA |
| 264 | 231.11 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 15 | 13 |
| 316 | 231.23 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 15 | 13 |
| 341 | 231.27 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 415 | 231.39 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 9 | NA |
| 422 | 231.40 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 11 | 21 |
| 464 | 231.46 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 1 | 10 |
| 500 | 231.52 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 508 | 231.54 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 10 | 22 |
| 710 | 231.85 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 750 | 231.90 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 766 | 231.93 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 777 | 231.96 | temperature | 25.0 | 4320 | > th | dose independent | no | NA | NA |
| 782 | 231.96 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 10 | 18 |
| 796 | 231.98 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 24 | 12 |
| 822 | 232.01 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 24 | 23 |
| 845 | 232.05 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 6 | 22 |
| 853 | 232.06 | temperature | 10.0 | 90 | > th | dose dependent | no | NA | NA |
| 890 | 232.11 | temperature | 25.0 | 4320 | < th | dose independent | no | NA | NA |
| 940 | 232.18 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 24 | 23 |
| 965 | 232.21 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 14 | 20 |