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Os09g0134900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.66 (0.02) R2 : 0.385
β1 : -1.19 (0.0734) R2dD : 0.366 R2D : 0.38
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0724 (0.0428) R2dN8 : 0.00519 R2N8 : 0.0186
σ : 0.376
deviance : 64.72
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C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39.73 0.296 9.74 -1.73 0.369 0.837 0.188 -1.31 -0.157 1.1 8.12 1263 -- --
41.14 0.299 9.7 -1.46 0.348 0.834 0.0828 -- -0.0904 1.2 9.576 1234 -- --
39.87 0.294 9.73 -1.72 0.368 0.84 -- -1.22 -0.155 1.05 7.693 1260 -- --
41.14 0.299 9.7 -1.45 0.364 0.825 -- -- -0.0837 1.03 9.752 1261 -- --
46.07 0.316 9.73 -1.75 -- 1.04 -- -1.28 -0.154 -- 2.426 1040 -- --
52.23 0.339 9.67 -1.2 0.448 -- 0.122 -- 0.0641 1.18 -- -- -- --
52.29 0.339 9.67 -1.2 0.448 -- -- -- 0.0634 1.17 -- -- -- --
47.29 0.32 9.7 -1.49 -- 1.03 -- -- -0.102 -- 4.445 1044 -- --
89.36 0.44 9.64 -- 0.39 0.179 -- -- 0.164 1.24 21.06 1070 -- --
64.72 0.376 9.66 -1.19 -- -- -- -- 0.0724 -- -- -- -- --
90.51 0.445 9.64 -- 0.428 -- -- -- 0.198 1.05 -- -- -- --
97.91 0.461 9.64 -- -- 0.336 -- -- 0.154 -- 21.36 1026 -- --
101.89 0.471 9.63 -- -- -- -- -- 0.204 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 39.57 temperature 10 720 > th dose dependent rect. 16 23
2 39.61 temperature 10 1440 > th dose dependent rect. 14 16
3 39.62 temperature 30 1440 < th dose dependent rect. 17 4
5 39.63 temperature 30 1440 < th dose dependent rect. 17 2
6 39.63 temperature 10 1440 > th dose dependent rect. 15 13
12 39.64 temperature 10 1440 > th dose dependent rect. 17 4
17 39.64 temperature 10 720 > th dose dependent rect. 1 23
36 39.69 temperature 10 1440 > th dose dependent rect. 18 1
38 39.70 temperature 10 1440 > th dose dependent sin 15 NA
72 39.73 temperature 30 1440 < th dose dependent rect. 15 13
85 39.74 temperature 30 1440 < th dose dependent rect. 15 9
102 39.75 temperature 30 1440 < th dose dependent rect. 14 16
103 39.75 temperature 10 720 > th dose dependent rect. 12 23
149 39.79 temperature 15 720 > th dose dependent rect. 14 23
151 39.80 temperature 30 1440 < th dose dependent sin 15 NA
201 39.83 temperature 30 720 < th dose dependent rect. 24 23
238 39.87 temperature 10 1440 > th dose dependent rect. 20 1
292 39.91 temperature 30 720 < th dose dependent rect. 22 23
352 39.96 temperature 30 720 < th dose dependent rect. 4 23
353 39.97 temperature 10 1440 > th dose dependent no NA NA
364 39.97 temperature 10 720 > th dose dependent rect. 20 23
365 39.97 temperature 10 1440 > th dose dependent rect. 23 23
379 39.98 temperature 10 1440 > th dose dependent rect. 5 23
387 39.98 temperature 30 720 < th dose dependent rect. 2 23
388 39.98 temperature 30 720 < th dose dependent rect. 15 23
463 40.03 temperature 30 720 < th dose dependent no NA NA
480 40.03 temperature 30 720 < th dose dependent rect. 17 23
594 40.09 temperature 30 720 < th dose dependent rect. 8 23