Os09g0134400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0134400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.32 | 0.259 | 12.3 | 0.102 | 0.79 | 0.249 | -0.231 | 1.37 | -0.167 | 21.7 | 20.8 | 1346 | -- | -- |
| 33.47 | 0.269 | 12.3 | -0.17 | 0.767 | 0.203 | -0.372 | -- | -0.233 | 21.4 | 24.7 | 2585 | -- | -- |
| 30.47 | 0.257 | 12.3 | 0.112 | 0.795 | 0.249 | -- | 1.37 | -0.168 | 21.7 | 20.8 | 1406 | -- | -- |
| 33.33 | 0.269 | 12.3 | -0.205 | 0.782 | 0.2 | -- | -- | -0.26 | 21.6 | 24.8 | 2621 | -- | -- |
| 65.62 | 0.377 | 12.2 | 0.0763 | -- | 0.418 | -- | 1.26 | -0.212 | -- | 24.9 | 2222 | -- | -- |
| 34.33 | 0.275 | 12.3 | -0.139 | 0.796 | -- | -0.159 | -- | -0.204 | 21.7 | -- | -- | -- | -- |
| 34.43 | 0.275 | 12.3 | -0.133 | 0.797 | -- | -- | -- | -0.203 | 21.7 | -- | -- | -- | -- |
| 57.75 | 0.354 | 12.3 | -0.305 | -- | 0.576 | -- | -- | -0.369 | -- | 25.1 | 724 | -- | -- |
| 34.31 | 0.273 | 12.3 | -- | 0.783 | 0.141 | -- | -- | -0.225 | 21.6 | 24.7 | 2592 | -- | -- |
| 72.11 | 0.397 | 12.3 | -0.126 | -- | -- | -- | -- | -0.205 | -- | -- | -- | -- | -- |
| 34.89 | 0.276 | 12.3 | -- | 0.796 | -- | -- | -- | -0.189 | 21.7 | -- | -- | -- | -- |
| 59.05 | 0.358 | 12.3 | -- | -- | 0.532 | -- | -- | -0.365 | -- | 25.26 | 737 | -- | -- |
| 72.53 | 0.398 | 12.3 | -- | -- | -- | -- | -- | -0.191 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 28 | 29.92 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 12 |
| 40 | 30.02 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 44 | 30.03 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 61 | 30.08 | temperature | 25 | 1440 | < th | dose dependent | sin | 18 | NA |
| 73 | 30.10 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 17 |
| 106 | 30.20 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 11 |
| 107 | 30.20 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 11 |
| 201 | 30.34 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 210 | 30.35 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 228 | 30.38 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 258 | 30.41 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 16 |
| 261 | 30.41 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 4 |
| 280 | 30.42 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 14 |
| 282 | 30.43 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 303 | 30.44 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 318 | 30.45 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 17 |
| 361 | 30.49 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 401 | 30.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 18 |
| 402 | 30.52 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 18 |
| 423 | 30.52 | radiation | 1 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 440 | 30.54 | wind | 7 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 454 | 30.55 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 16 |
| 473 | 30.56 | temperature | 20 | 4320 | < th | dose independent | sin | 18 | NA |
| 531 | 30.59 | temperature | 20 | 4320 | > th | dose independent | sin | 18 | NA |
| 632 | 30.65 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 677 | 30.67 | wind | 7 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 709 | 30.68 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 748 | 30.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 762 | 30.71 | wind | 7 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 815 | 30.73 | temperature | 10 | 1440 | > th | dose dependent | sin | 16 | NA |
| 828 | 30.74 | temperature | 20 | 1440 | > th | dose independent | sin | 22 | NA |
| 831 | 30.74 | wind | 7 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 836 | 30.74 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 837 | 30.74 | humidity | 70 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 854 | 30.74 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 864 | 30.75 | wind | 7 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 899 | 30.77 | temperature | 20 | 720 | < th | dose independent | sin | 22 | NA |
| 963 | 30.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 980 | 30.80 | wind | 1 | 14400 | < th | dose independent | rect. | 9 | 3 |