FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0133000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SWIB/MDM2 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.21 (0.0222) R2 : 0.414
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.621 (0.0577) R2dC : 0.156 R2C : 0.0748
β3 : 1.39 (0.103) R2dE : 0.265 R2E : 0.223
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.198 (0.0484) R2dN8 : 0.0304 R2N8 : 0.0713
σ : 0.412
deviance : 78.39
__
_____
C
peak time of C : 16.3
E
wheather : temperature
threshold : 24.1
memory length : 52
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
75.85 0.409 8.2 0.297 0.629 1.45 0.445 -0.324 -0.15 16 24.1 12 -- --
75.94 0.406 8.21 0.263 0.629 1.5 0.522 -- -0.157 16 24.1 38 -- --
76.25 0.407 8.19 0.335 0.63 1.45 -- -0.513 -0.137 16.2 24.1 52 -- --
76.65 0.408 8.2 0.273 0.642 1.51 -- -- -0.153 16.3 24.1 79 -- --
96.46 0.46 8.2 0.272 -- 1.14 -- -0.764 -0.199 -- 24 34 -- --
107.53 0.486 8.26 -0.0762 0.493 -- 0.415 -- -0.399 17.3 -- -- -- --
107.93 0.487 8.26 -0.0774 0.497 -- -- -- -0.398 17.5 -- -- -- --
97.32 0.459 8.21 0.181 -- 1.28 -- -- -0.227 -- 23.55 50 -- --
78.39 0.412 8.21 -- 0.621 1.39 -- -- -0.198 16.3 24.1 52 -- --
120.79 0.514 8.25 -0.0939 -- -- -- -- -0.41 -- -- -- -- --
108.09 0.486 8.26 -- 0.498 -- -- -- -0.389 17.5 -- -- -- --
98.08 0.463 8.22 -- -- 1.2 -- -- -0.257 -- 23.47 48 -- --
121.02 0.513 8.25 -- -- -- -- -- -0.399 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 75.75 temperature 25 10 < th dose dependent rect. 8 22
9 75.97 temperature 25 10 < th dose dependent rect. 5 23
10 76.05 temperature 25 270 < th dose dependent rect. 6 22
13 76.19 temperature 25 10 < th dose dependent rect. 20 20
22 76.42 temperature 25 10 < th dose dependent rect. 18 22
25 76.43 temperature 25 10 < th dose dependent rect. 23 23
32 76.55 temperature 25 90 < th dose dependent rect. 21 22
33 76.56 temperature 25 10 < th dose dependent rect. 15 23
34 76.58 temperature 25 10 < th dose dependent no NA NA
40 76.62 temperature 25 10 < th dose dependent rect. 13 23
51 76.72 temperature 25 10 < th dose dependent rect. 11 23
78 76.94 temperature 25 30 < th dose dependent rect. 3 23
84 76.98 temperature 25 30 < th dose dependent rect. 1 23
144 77.50 temperature 15 720 > th dose dependent sin 13 NA
213 77.96 temperature 30 720 < th dose dependent sin 14 NA
225 78.03 temperature 15 720 > th dose dependent rect. 16 16
236 78.11 temperature 30 720 < th dose dependent rect. 17 10
268 78.41 temperature 20 270 > th dose independent rect. 23 22
284 78.52 temperature 30 720 < th dose dependent rect. 15 14
300 78.63 temperature 20 270 > th dose independent rect. 14 17
309 78.69 temperature 20 270 > th dose independent rect. 11 21
360 79.08 temperature 15 720 > th dose dependent rect. 18 8
376 79.17 temperature 20 90 > th dose independent rect. 17 15
422 79.66 temperature 20 270 > th dose independent rect. 1 19
428 79.71 temperature 20 270 > th dose independent rect. 2 17
438 79.77 temperature 25 10 < th dose dependent sin 8 NA
463 79.94 temperature 10 1440 > th dose dependent rect. 4 4
480 80.05 temperature 30 1440 < th dose dependent rect. 4 4
638 80.63 temperature 10 1440 > th dose dependent sin 8 NA
641 80.63 temperature 30 1440 < th dose dependent rect. 21 12
648 80.64 temperature 10 1440 > th dose dependent rect. 21 12
740 80.74 temperature 30 1440 < th dose dependent sin 8 NA