FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0131600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.0373) R2 : 0.00502
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.119 (0.0785) R2dN8 : 0.00649 R2N8 : 0.00502
σ : 0.703
deviance : 226.52
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
219.92 0.697 2.94 0.0619 1.07 0.938 -0.221 -0.478 0.157 13.4 0.6003 264 -- --
220.03 0.691 2.95 0.0528 1.07 0.942 0.302 -- 0.138 13.5 0.5384 266 -- --
219.93 0.691 2.94 0.0523 1.07 0.938 -- -0.29 0.155 13.4 0.5533 264 -- --
220.38 0.691 2.95 0.0479 1.08 0.943 -- -- 0.152 13.4 0.5597 264 -- --
224.64 0.698 2.97 -0.0414 -- 0.285 -- 0.169 0.12 -- 0.07987 829 -- --
225.16 0.703 2.96 -0.0439 0.149 -- 0.228 -- 0.113 7.42 -- -- -- --
225.29 0.703 2.96 -0.0393 0.151 -- -- -- 0.112 7.04 -- -- -- --
224.14 0.697 2.97 0.0165 -- 0.289 -- -- 0.114 -- 0.02 1244 -- --
220.44 0.692 2.95 -- 1.08 0.942 -- -- 0.152 13.4 0.5664 264 -- --
226.48 0.703 2.96 -0.0363 -- -- -- -- 0.115 -- -- -- -- --
225.33 0.702 2.96 -- 0.15 -- -- -- 0.117 7.06 -- -- -- --
223.04 0.696 2.96 -- -- 0.446 -- -- 0.148 -- 0.009901 2537 -- --
226.52 0.703 2.96 -- -- -- -- -- 0.119 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 204.56 radiation 1.0 270 < th dose independent rect. 10 2
2 204.56 radiation 1.0 270 < th dose dependent rect. 10 2
5 205.23 radiation 1.0 10 < th dose independent rect. 6 8
7 205.70 radiation 1.0 10 < th dose independent rect. 11 3
15 205.70 radiation 1.0 10 < th dose dependent rect. 11 3
23 205.90 radiation 1.0 10 < th dose dependent rect. 6 8
31 206.92 radiation 1.0 90 < th dose independent rect. 10 5
32 206.92 radiation 1.0 90 < th dose dependent rect. 10 5
87 210.27 radiation 1.0 720 > th dose independent rect. 4 1
97 210.27 radiation 1.0 720 > th dose dependent rect. 4 1
111 211.15 humidity 80.0 90 > th dose dependent rect. 12 1
114 211.48 radiation 1.0 10 < th dose independent rect. 13 1
124 211.48 radiation 1.0 10 < th dose dependent rect. 13 1
134 211.61 humidity 80.0 270 > th dose independent rect. 12 1
153 212.49 radiation 1.0 30 < th dose dependent rect. 5 11
175 213.43 radiation 10.0 1440 < th dose dependent rect. 4 1
181 213.66 radiation 10.0 1440 < th dose dependent rect. 19 10
185 213.74 radiation 1.0 1440 < th dose independent rect. 4 1
187 213.78 radiation 1.0 1440 < th dose independent rect. 19 10
188 213.91 radiation 1.0 1440 > th dose independent rect. 8 4
189 213.91 temperature 20.0 30 > th dose dependent rect. 2 1
190 213.93 atmosphere 1005.0 30 > th dose dependent rect. 2 1
192 213.96 temperature 20.0 30 > th dose independent rect. 2 1
194 213.98 atmosphere 1005.0 30 > th dose independent rect. 2 1
202 214.12 wind 3.0 30 < th dose dependent rect. 2 1
204 214.14 wind 3.0 30 < th dose independent rect. 2 1
205 214.14 temperature 25.0 30 < th dose independent rect. 2 1
206 214.15 humidity 80.0 30 > th dose independent rect. 2 1
211 214.18 radiation 1.0 30 < th dose dependent rect. 5 2
214 214.20 wind 9.0 30 < th dose independent rect. 2 1
215 214.20 temperature 10.0 30 > th dose independent rect. 2 1
218 214.20 humidity 50.0 30 > th dose independent rect. 2 1
222 214.20 atmosphere 1010.0 30 < th dose independent rect. 2 1
224 214.20 radiation 1.0 30 < th dose independent rect. 2 1
229 214.20 precipitation 0.1 30 < th dose independent rect. 2 1
230 214.20 temperature 10.0 30 > th dose independent rect. 3 23
231 214.20 humidity 50.0 30 > th dose dependent rect. 2 1
233 214.20 radiation 1.0 30 < th dose dependent rect. 2 1
238 214.20 precipitation 0.1 30 < th dose dependent rect. 2 1
239 214.20 radiation 10.0 1440 < th dose dependent rect. 2 3
263 214.53 radiation 1.0 1440 < th dose independent rect. 2 3
264 214.58 atmosphere 1015.0 43200 > th dose dependent rect. 15 1
292 214.83 atmosphere 1015.0 30 < th dose dependent rect. 2 1
298 214.88 temperature 30.0 30 < th dose dependent rect. 2 1
310 214.98 atmosphere 1015.0 43200 < th dose independent rect. 15 1
344 215.09 atmosphere 1015.0 43200 > th dose independent rect. 15 1
354 215.11 atmosphere 1015.0 43200 < th dose independent rect. 18 1
355 215.12 atmosphere 1015.0 43200 < th dose independent rect. 15 4
386 215.38 temperature 25.0 270 < th dose independent rect. 11 3
412 215.65 wind 1.0 30 > th dose independent rect. 2 1
436 215.87 radiation 1.0 14400 < th dose dependent rect. 9 3
441 215.91 temperature 25.0 720 < th dose independent rect. 23 6
448 215.92 radiation 1.0 14400 > th dose independent rect. 10 1
449 215.92 wind 9.0 30 < th dose independent rect. 3 23
454 215.98 humidity 50.0 1440 > th dose independent rect. 8 5
457 216.03 humidity 80.0 10 > th dose independent rect. 14 1
469 216.12 humidity 50.0 1440 > th dose independent rect. 18 19
471 216.13 radiation 40.0 4320 < th dose dependent rect. 18 6
486 216.25 radiation 1.0 14400 > th dose independent rect. 8 4
496 216.31 temperature 25.0 720 > th dose independent rect. 4 2
498 216.32 humidity 80.0 30 > th dose independent rect. 23 18
503 216.36 temperature 25.0 720 > th dose independent rect. 24 6
521 216.49 radiation 1.0 270 < th dose dependent rect. 19 21
527 216.53 wind 5.0 30 < th dose dependent rect. 11 20
528 216.54 temperature 25.0 1440 < th dose independent rect. 4 2
533 216.57 radiation 1.0 14400 < th dose independent rect. 10 1
534 216.57 humidity 50.0 1440 > th dose independent rect. 4 9
535 216.57 radiation 1.0 14400 < th dose dependent rect. 10 1
540 216.60 radiation 1.0 30 < th dose independent rect. 5 2
554 216.63 humidity 90.0 720 < th dose independent rect. 2 1
556 216.64 temperature 25.0 720 < th dose independent rect. 23 4
557 216.65 temperature 25.0 90 > th dose independent rect. 3 4
568 216.70 radiation 1.0 14400 < th dose independent rect. 8 4
571 216.72 wind 1.0 43200 > th dose independent rect. 16 1
573 216.72 radiation 40.0 14400 < th dose independent rect. 15 17
598 216.80 radiation 1.0 14400 > th dose independent rect. 8 1
602 216.81 humidity 50.0 1440 > th dose independent rect. 2 11
631 216.84 temperature 10.0 10 > th dose dependent rect. 7 16
634 216.85 radiation 30.0 14400 < th dose independent rect. 18 13
637 216.86 radiation 40.0 14400 < th dose independent rect. 7 1
643 216.87 wind 1.0 43200 < th dose independent rect. 16 1
649 216.91 wind 1.0 43200 < th dose dependent rect. 16 1
650 216.92 radiation 20.0 14400 < th dose independent rect. 17 7
658 216.93 radiation 20.0 14400 < th dose independent rect. 17 10
660 216.93 radiation 20.0 90 < th dose dependent rect. 22 18
668 216.98 radiation 40.0 14400 < th dose independent rect. 15 9
673 216.99 wind 1.0 14400 < th dose dependent rect. 13 5
674 217.00 temperature 25.0 1440 < th dose independent rect. 2 4
680 217.01 radiation 40.0 14400 < th dose independent rect. 15 12
681 217.01 wind 3.0 30 < th dose independent rect. 11 20
697 217.03 humidity 50.0 90 > th dose dependent rect. 11 6
707 217.06 humidity 70.0 14400 > th dose independent rect. 24 7
708 217.06 radiation 40.0 14400 < th dose independent rect. 15 14
711 217.07 radiation 40.0 14400 < th dose independent rect. 15 1
712 217.07 humidity 70.0 14400 > th dose independent rect. 3 4
725 217.09 temperature 25.0 30 > th dose dependent rect. 4 3
743 217.14 radiation 1.0 14400 < th dose independent rect. 8 1
744 217.14 atmosphere 1010.0 30 < th dose dependent rect. 6 1
746 217.15 wind 1.0 14400 < th dose independent rect. 13 5
788 217.23 radiation 1.0 270 < th dose independent rect. 20 20
809 217.26 atmosphere 1015.0 90 < th dose independent rect. 17 18
826 217.31 radiation 40.0 4320 < th dose dependent rect. 18 1
852 217.37 humidity 70.0 14400 > th dose independent rect. 6 1
869 217.40 humidity 60.0 14400 > th dose independent rect. 19 5
880 217.43 radiation 40.0 14400 < th dose independent rect. 4 4
882 217.43 humidity 60.0 14400 > th dose independent rect. 19 8
894 217.45 humidity 50.0 14400 < th dose independent rect. 17 1
915 217.46 wind 1.0 14400 > th dose independent rect. 13 5
934 217.50 wind 5.0 10 > th dose independent rect. 13 1
953 217.53 temperature 25.0 30 > th dose dependent rect. 2 5
960 217.54 temperature 25.0 30 > th dose dependent rect. 6 1
987 217.58 wind 1.0 14400 > th dose independent rect. 15 3
994 217.60 temperature 15.0 43200 > th dose independent rect. 1 1
998 217.60 radiation 40.0 14400 < th dose independent rect. 2 6