Os09g0131400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os09g0131400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.51 | 0.452 | 7.03 | -0.207 | 0.289 | -1.72 | 0.174 | -1.51 | 0.14 | 3.17 | 22.86 | 95 | -- | -- |
| 94.63 | 0.453 | 7.05 | -0.357 | 0.313 | -1.5 | -0.481 | -- | 0.0839 | 4.33 | 23.01 | 101 | -- | -- |
| 92.32 | 0.448 | 7.02 | -0.215 | 0.288 | -1.81 | -- | -1.64 | 0.143 | 3.76 | 22.52 | 130 | -- | -- |
| 94.98 | 0.457 | 7.05 | -0.328 | 0.271 | -1.41 | -- | -- | 0.117 | 3.17 | 23.01 | 101 | -- | -- |
| 96.74 | 0.458 | 7.03 | -0.194 | -- | -1.62 | -- | -1.4 | 0.164 | -- | 22.57 | 133 | -- | -- |
| 117.98 | 0.509 | 7.01 | -0.0283 | 0.157 | -- | -0.763 | -- | 0.299 | 6.87 | -- | -- | -- | -- |
| 119.47 | 0.512 | 7.01 | -0.0423 | 0.156 | -- | -- | -- | 0.301 | 6.55 | -- | -- | -- | -- |
| 98.74 | 0.463 | 7.05 | -0.304 | -- | -1.3 | -- | -- | 0.14 | -- | 23 | 69 | -- | -- |
| 97.51 | 0.462 | 7.04 | -- | 0.25 | -1.28 | -- | -- | 0.167 | 3.33 | 23 | 61 | -- | -- |
| 120.73 | 0.513 | 7.01 | -0.0385 | -- | -- | -- | -- | 0.304 | -- | -- | -- | -- | -- |
| 119.51 | 0.511 | 7 | -- | 0.155 | -- | -- | -- | 0.306 | 6.56 | -- | -- | -- | -- |
| 100.82 | 0.469 | 7.04 | -- | -- | -1.16 | -- | -- | 0.185 | -- | 23 | 69 | -- | -- |
| 120.77 | 0.513 | 7.01 | -- | -- | -- | -- | -- | 0.308 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.51 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 2 | 93.68 | temperature | 25 | 270 | < th | dose dependent | rect. | 9 | 21 |
| 8 | 93.95 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 16 | 94.22 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 22 | 94.29 | temperature | 25 | 270 | < th | dose dependent | sin | 13 | NA |
| 29 | 94.39 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 23 |
| 31 | 94.43 | temperature | 20 | 10 | < th | dose independent | sin | 11 | NA |
| 33 | 94.43 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 35 | 94.46 | temperature | 10 | 90 | > th | dose dependent | sin | 10 | NA |
| 36 | 94.46 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 39 | 94.47 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 56 | 94.59 | temperature | 30 | 90 | < th | dose dependent | sin | 10 | NA |
| 67 | 94.67 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 78 | 94.84 | temperature | 25 | 270 | < th | dose dependent | rect. | 14 | 15 |
| 79 | 94.84 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 84 | 94.88 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 88 | 94.90 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 16 |
| 90 | 94.90 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 92 | 94.91 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 95 | 94.92 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 96 | 94.92 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 104 | 94.96 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 112 | 94.97 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 113 | 94.98 | temperature | 20 | 10 | > th | dose independent | sin | 10 | NA |
| 182 | 95.22 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 260 | 95.42 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 14 |
| 339 | 95.61 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 10 |
| 347 | 95.62 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 464 | 95.85 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 23 |
| 506 | 95.91 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 19 |
| 647 | 96.18 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 16 |
| 746 | 96.41 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 9 |
| 748 | 96.41 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 10 |
| 774 | 96.49 | temperature | 20 | 90 | < th | dose independent | rect. | 9 | 21 |
| 799 | 96.57 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 877 | 96.75 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 20 |
| 976 | 96.95 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 23 |
| 997 | 96.99 | temperature | 20 | 90 | > th | dose independent | no | NA | NA |