Os09g0131000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0131000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.27 | 0.333 | 9.89 | 0.646 | 0.0837 | 0.374 | 0.181 | 3.16 | -0.0914 | 12 | 14.6 | 3943 | -- | -- |
| 55.09 | 0.346 | 9.98 | 0.0102 | 0.04 | 0.275 | 0.196 | -- | -0.194 | 13.6 | 30.17 | 1175 | -- | -- |
| 50.38 | 0.331 | 9.89 | 0.652 | 0.0776 | 0.372 | -- | 3.11 | -0.0896 | 12.2 | 14.69 | 4131 | -- | -- |
| 54.05 | 0.342 | 9.98 | -0.0567 | 0.095 | 0.409 | -- | -- | -0.158 | 12.9 | 30.3 | 2590 | -- | -- |
| 50.67 | 0.332 | 9.89 | 0.626 | -- | 0.382 | -- | 3 | -0.0955 | -- | 14.59 | 4404 | -- | -- |
| 60.46 | 0.365 | 9.99 | 0.0468 | 0.0497 | -- | 0.0267 | -- | -0.235 | 11.3 | -- | -- | -- | -- |
| 60.47 | 0.364 | 9.99 | 0.048 | 0.0495 | -- | -- | -- | -0.235 | 11.5 | -- | -- | -- | -- |
| 54.57 | 0.344 | 9.98 | -0.0539 | -- | 0.389 | -- | -- | -0.165 | -- | 30.5 | 2607 | -- | -- |
| 54.11 | 0.343 | 9.98 | -- | 0.0921 | 0.407 | -- | -- | -0.155 | 12.3 | 30.34 | 2563 | -- | -- |
| 60.62 | 0.364 | 10 | 0.0467 | -- | -- | -- | -- | -0.235 | -- | -- | -- | -- | -- |
| 60.53 | 0.364 | 10 | -- | 0.049 | -- | -- | -- | -0.24 | 11.4 | -- | -- | -- | -- |
| 54.65 | 0.344 | 9.98 | -- | -- | 0.381 | -- | -- | -0.16 | -- | 30.5 | 2600 | -- | -- |
| 60.68 | 0.364 | 10 | -- | -- | -- | -- | -- | -0.241 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.35 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 49.40 | temperature | 15 | 4320 | > th | dose dependent | rect. | 17 | 5 |
| 4 | 49.42 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 5 | 49.43 | temperature | 15 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 20 | 49.49 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 58 | 49.58 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 112 | 49.70 | temperature | 15 | 4320 | > th | dose dependent | sin | 16 | NA |
| 266 | 50.03 | temperature | 30 | 4320 | < th | dose dependent | sin | 15 | NA |
| 487 | 50.37 | temperature | 15 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 488 | 50.38 | temperature | 15 | 4320 | > th | dose dependent | no | NA | NA |
| 500 | 50.38 | temperature | 15 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 559 | 50.42 | temperature | 15 | 4320 | > th | dose dependent | rect. | 1 | 23 |
| 577 | 50.43 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 23 |