Os09g0129600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Site-specific recombinase family protein.
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Os09g0129600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Site-specific recombinase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 406.6 | 0.947 | 3.29 | -1.04 | 0.467 | -0.985 | 0.264 | 4.58 | -0.303 | 0.0828 | 8.93 | 19434 | -- | -- |
| 446.44 | 0.984 | 3.37 | -0.652 | 0.431 | -1.5 | 0.197 | -- | -0.334 | 0.136 | 9.913 | 23285 | -- | -- |
| 405.7 | 0.938 | 3.29 | -1.07 | 0.513 | -1.01 | -- | 4.6 | -0.327 | 0.0436 | 8.75 | 20535 | -- | -- |
| 445.5 | 0.983 | 3.37 | -0.715 | 0.468 | -1.32 | -- | -- | -0.344 | 23.7 | 9.91 | 23303 | -- | -- |
| 416.53 | 0.951 | 3.28 | -1.02 | -- | -0.992 | -- | 4.46 | -0.333 | -- | 8.39 | 21307 | -- | -- |
| 480.4 | 1.03 | 3.4 | -1.38 | 0.459 | -- | 0.323 | -- | -0.232 | 23.4 | -- | -- | -- | -- |
| 480.85 | 1.03 | 3.4 | -1.39 | 0.458 | -- | -- | -- | -0.233 | 23.4 | -- | -- | -- | -- |
| 453.53 | 0.992 | 3.42 | -0.683 | -- | -1.3 | -- | -- | -0.372 | -- | 9.84 | 24049 | -- | -- |
| 456.37 | 0.995 | 3.37 | -- | 0.413 | -1.58 | -- | -- | -0.309 | 23.4 | 9.744 | 23286 | -- | -- |
| 493.99 | 1.04 | 3.39 | -1.38 | -- | -- | -- | -- | -0.229 | -- | -- | -- | -- | -- |
| 532.01 | 1.08 | 3.36 | -- | 0.444 | -- | -- | -- | -0.0782 | 23.2 | -- | -- | -- | -- |
| 461.63 | 1 | 3.42 | -- | -- | -1.71 | -- | -- | -0.38 | -- | 9.99 | 24007 | -- | -- |
| 544.33 | 1.09 | 3.35 | -- | -- | -- | -- | -- | -0.0755 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 394.26 | wind | 1 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 3 | 396.39 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 4 | 397.19 | wind | 1 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 6 | 399.62 | radiation | 20 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 7 | 399.69 | radiation | 20 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 9 | 399.75 | radiation | 20 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 19 | 399.87 | radiation | 40 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 23 | 399.98 | radiation | 40 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 42 | 400.95 | radiation | 1 | 14400 | > th | dose dependent | rect. | 18 | 13 |
| 45 | 401.05 | radiation | 20 | 14400 | < th | dose dependent | rect. | 17 | 15 |
| 49 | 401.44 | radiation | 1 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 109 | 403.12 | radiation | 20 | 14400 | < th | dose independent | sin | 11 | NA |
| 118 | 403.29 | radiation | 20 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 131 | 403.66 | radiation | 20 | 14400 | < th | dose independent | rect. | 16 | 16 |
| 236 | 404.44 | radiation | 20 | 14400 | < th | dose dependent | sin | 11 | NA |
| 240 | 404.53 | radiation | 20 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 241 | 404.54 | radiation | 20 | 14400 | < th | dose independent | rect. | 21 | 13 |
| 244 | 404.55 | radiation | 20 | 14400 | < th | dose independent | rect. | 19 | 15 |
| 259 | 404.69 | radiation | 10 | 14400 | < th | dose independent | rect. | 12 | 20 |
| 344 | 405.39 | radiation | 1 | 14400 | > th | dose dependent | sin | 11 | NA |
| 356 | 405.50 | radiation | 40 | 14400 | < th | dose independent | rect. | 13 | 19 |
| 373 | 405.64 | radiation | 40 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 374 | 405.66 | radiation | 20 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 401 | 405.99 | radiation | 40 | 14400 | > th | dose dependent | rect. | 13 | 19 |
| 433 | 406.04 | radiation | 40 | 14400 | < th | dose independent | rect. | 13 | 3 |
| 436 | 406.06 | radiation | 40 | 14400 | < th | dose independent | rect. | 13 | 12 |
| 444 | 406.08 | radiation | 40 | 14400 | < th | dose independent | rect. | 13 | 7 |
| 449 | 406.09 | radiation | 40 | 14400 | < th | dose independent | rect. | 13 | 9 |
| 495 | 406.43 | radiation | 40 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 511 | 406.50 | radiation | 20 | 14400 | < th | dose independent | rect. | 21 | 21 |
| 512 | 406.51 | radiation | 20 | 14400 | < th | dose independent | no | NA | NA |
| 514 | 406.51 | radiation | 20 | 14400 | < th | dose independent | rect. | 5 | 13 |
| 730 | 406.84 | radiation | 40 | 14400 | < th | dose independent | sin | 14 | NA |
| 735 | 406.90 | radiation | 10 | 14400 | < th | dose independent | rect. | 12 | 13 |
| 736 | 406.91 | radiation | 10 | 14400 | < th | dose independent | rect. | 12 | 8 |
| 737 | 406.91 | radiation | 10 | 14400 | < th | dose independent | rect. | 12 | 11 |
| 882 | 407.29 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 1 |