Os09g0128600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CMP/dCMP deaminase, zinc-binding domain containing protein.
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Os09g0128600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CMP/dCMP deaminase, zinc-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.01 | 0.401 | 8.71 | -1.04 | 1.52 | -0.534 | 0.117 | -1.46 | 0.187 | 17.7 | 68 | 4847 | -- | -- |
| 74.66 | 0.402 | 8.7 | -0.965 | 1.46 | -0.582 | -0.163 | -- | 0.28 | 17.5 | 74.84 | 2824 | -- | -- |
| 73.04 | 0.398 | 8.71 | -1.05 | 1.52 | -0.534 | -- | -1.44 | 0.187 | 17.6 | 67.99 | 4842 | -- | -- |
| 74.24 | 0.401 | 8.69 | -0.939 | 1.44 | -0.634 | -- | -- | 0.294 | 17.7 | 76 | 2789 | -- | -- |
| 182.26 | 0.629 | 8.65 | -1.28 | -- | -0.689 | -- | -1.4 | 0.234 | -- | 67.93 | 8513 | -- | -- |
| 83.36 | 0.428 | 8.71 | -1 | 1.47 | -- | -0.00159 | -- | 0.202 | 17.6 | -- | -- | -- | -- |
| 83.36 | 0.428 | 8.71 | -1 | 1.47 | -- | -- | -- | 0.202 | 17.6 | -- | -- | -- | -- |
| 178.36 | 0.622 | 8.66 | -1.02 | -- | -0.953 | -- | -- | 0.269 | -- | 76 | 2730 | -- | -- |
| 97.79 | 0.461 | 8.66 | -- | 1.44 | -0.693 | -- | -- | 0.394 | 17.8 | 73.91 | 2719 | -- | -- |
| 195.26 | 0.653 | 8.69 | -1.05 | -- | -- | -- | -- | 0.167 | -- | -- | -- | -- | -- |
| 109.88 | 0.49 | 8.68 | -- | 1.48 | -- | -- | -- | 0.314 | 17.6 | -- | -- | -- | -- |
| 204.57 | 0.666 | 8.64 | -- | -- | -0.939 | -- | -- | 0.389 | -- | 75.05 | 2723 | -- | -- |
| 224.38 | 0.699 | 8.66 | -- | -- | -- | -- | -- | 0.284 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.05 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 5 |
| 3 | 67.31 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 5 |
| 6 | 67.80 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 7 | 67.80 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 9 | 67.83 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 10 | 67.83 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 21 | 68.65 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 28 | 68.92 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 31 | 69.02 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 44 | 69.41 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 48 | 69.51 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 62 | 69.88 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 63 | 69.88 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 70 | 69.98 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 71 | 69.98 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 76 | 70.02 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 78 | 70.05 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 1 | 5 |
| 81 | 70.07 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 83 | 70.08 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 86 | 70.13 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 1 |
| 88 | 70.17 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 98 | 70.25 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 7 | 21 |
| 99 | 70.27 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 106 | 70.32 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 5 |
| 108 | 70.34 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 1 | 13 |
| 113 | 70.42 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 1 | 13 |
| 123 | 70.47 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 138 | 70.51 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 146 | 70.55 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 6 |
| 154 | 70.58 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 157 | 70.59 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 3 | 11 |
| 162 | 70.61 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 5 | 9 |
| 179 | 70.67 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 14 | 3 |
| 181 | 70.67 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 7 | 7 |
| 191 | 70.73 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 211 | 70.79 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 14 |
| 212 | 70.79 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 14 |
| 213 | 70.80 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 219 | 70.80 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 246 | 70.88 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 14 |
| 254 | 70.90 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 14 | 20 |
| 258 | 70.92 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 16 |
| 269 | 70.95 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 8 |
| 271 | 70.95 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 8 |
| 273 | 70.96 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 10 | 7 |
| 301 | 71.00 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 306 | 71.01 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 14 |
| 328 | 71.06 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 16 |
| 332 | 71.06 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 16 |
| 334 | 71.07 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 5 |
| 339 | 71.07 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 5 |
| 343 | 71.08 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 349 | 71.08 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 13 | 7 |
| 370 | 71.10 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 16 |
| 465 | 71.27 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 1 | 12 |
| 472 | 71.29 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 12 |
| 474 | 71.29 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 12 |
| 477 | 71.30 | humidity | 60.0 | 14400 | < th | dose dependent | sin | 16 | NA |
| 481 | 71.31 | humidity | 80.0 | 1440 | > th | dose independent | sin | 4 | NA |
| 513 | 71.35 | humidity | 80.0 | 1440 | < th | dose independent | sin | 5 | NA |
| 523 | 71.36 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 12 |
| 541 | 71.39 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 12 |
| 554 | 71.41 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 8 |
| 556 | 71.42 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 19 | 9 |
| 559 | 71.42 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 19 | 9 |
| 562 | 71.43 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 570 | 71.45 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 571 | 71.45 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 575 | 71.46 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 19 |
| 579 | 71.46 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 19 |
| 588 | 71.48 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 614 | 71.51 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 10 |
| 617 | 71.52 | temperature | 20.0 | 270 | > th | dose independent | rect. | 9 | 17 |
| 618 | 71.52 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 5 | NA |
| 632 | 71.54 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 662 | 71.59 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 664 | 71.59 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 19 | 9 |
| 750 | 71.73 | wind | 1.0 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 763 | 71.75 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 8 |
| 781 | 71.78 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 819 | 71.84 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 830 | 71.86 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 5 | NA |
| 833 | 71.87 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 843 | 71.88 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 14 | 22 |
| 863 | 71.91 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 901 | 71.94 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 14 | 20 |
| 903 | 71.94 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 919 | 71.96 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 8 |
| 923 | 71.97 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 924 | 71.97 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 989 | 72.04 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 21 |
| 996 | 72.04 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 999 | 72.05 | humidity | 60.0 | 14400 | < th | dose dependent | no | NA | NA |