Os09g0120100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0120100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.19 | 0.189 | 11.9 | 0.689 | 0.505 | -0.325 | 0.24 | 0.758 | 0.267 | 21.2 | 10.01 | 1500 | -- | -- |
| 17.14 | 0.193 | 11.9 | 0.626 | 0.497 | -0.387 | 0.103 | -- | 0.264 | 20.9 | 10 | 1595 | -- | -- |
| 16.39 | 0.189 | 11.9 | 0.687 | 0.503 | -0.322 | -- | 0.754 | 0.267 | 21.2 | 10 | 1499 | -- | -- |
| 17.15 | 0.193 | 11.9 | 0.582 | 0.501 | -0.347 | -- | -- | 0.229 | 21 | 10 | 1588 | -- | -- |
| 24.55 | 0.232 | 11.9 | 0.495 | -- | -0.324 | -- | 0.178 | 0.122 | -- | 10 | 1499 | -- | -- |
| 19.4 | 0.206 | 11.9 | 0.484 | 0.519 | -- | 0.171 | -- | 0.134 | 21.3 | -- | -- | -- | -- |
| 19.51 | 0.207 | 11.9 | 0.478 | 0.518 | -- | -- | -- | 0.134 | 21.3 | -- | -- | -- | -- |
| 24.01 | 0.229 | 11.9 | 0.467 | -- | -0.317 | -- | -- | 0.158 | -- | 3.725 | 1559 | -- | -- |
| 24.26 | 0.231 | 11.9 | -- | 0.398 | -0.188 | -- | -- | 0.0756 | 20.1 | 10 | 1588 | -- | -- |
| 35.12 | 0.277 | 11.9 | 0.48 | -- | -- | -- | -- | 0.132 | -- | -- | -- | -- | -- |
| 25.53 | 0.236 | 11.9 | -- | 0.518 | -- | -- | -- | 0.0808 | 21.4 | -- | -- | -- | -- |
| 29.76 | 0.255 | 11.9 | -- | -- | -0.322 | -- | -- | 0.106 | -- | 3.725 | 1559 | -- | -- |
| 41.21 | 0.3 | 11.9 | -- | -- | -- | -- | -- | 0.0785 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.20 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 3 | 15.30 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 14 | 15.37 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 17 | 15.45 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 6 |
| 18 | 15.46 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 4 |
| 27 | 15.49 | radiation | 10 | 1440 | < th | dose dependent | sin | 19 | NA |
| 37 | 15.53 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 9 |
| 70 | 15.57 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 71 | 15.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 92 | 15.75 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 103 | 15.81 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 107 | 15.84 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 112 | 15.85 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 113 | 15.86 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 136 | 15.94 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 8 |
| 189 | 16.04 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 225 | 16.09 | radiation | 10 | 1440 | > th | dose independent | sin | 21 | NA |
| 259 | 16.15 | humidity | 60 | 14400 | > th | dose independent | rect. | 20 | 10 |
| 285 | 16.17 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 309 | 16.18 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 337 | 16.20 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 395 | 16.25 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 641 | 16.43 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 643 | 16.43 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 645 | 16.43 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 701 | 16.43 | humidity | 60 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 703 | 16.43 | humidity | 60 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 705 | 16.43 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 760 | 16.44 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 23 |
| 762 | 16.45 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 763 | 16.45 | radiation | 10 | 90 | > th | dose independent | sin | 0 | NA |
| 852 | 16.50 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 903 | 16.52 | radiation | 10 | 90 | > th | dose independent | rect. | 17 | 23 |
| 915 | 16.54 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 932 | 16.55 | radiation | 10 | 90 | > th | dose independent | rect. | 6 | 10 |