Os09g0119300 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0119300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.54	(0.0322)	R²	:	0.627
β₁	:	0.909	(0.115)	R²_dD	:	0.0615	R²_D	:	-0.236
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	-46.5	(2.11)	R²_dE	:	14.9	R²_E	:	-17.9
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	165	(6.74)	R²_dD*E	:	18.3	R²_D*E	:	-14.2
γ₁	:	0.223	(0.0626)	R²_dN8	:	0.0145	R²_N8	:	-0.122
σ	:	0.548
deviance	:	138.55
__

_____

C
peak time of C	:	--
E
wheather	:	precipitation
threshold	:	0.4973
memory length	:	38
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	sin
peak or start time of G	:	19.1
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
137.72	0.551	2.54	0.914	0.0521	-45.6	-0.673	162	0.22	5.01	0.4835	38	19.1	--
362.57	0.894	2.87	0.0523	0.0709	0.0476	1.27	--	0.21	15.5	0.4835	38	19.1	--
138.5	0.548	2.54	0.923	0.0369	-46.8	--	166	0.242	6.37	0.4955	38	19.1	--
302.63	0.81	2.86	0.116	0.0936	5.5	--	--	0.237	8.42	1	38	20.4	--
138.55	0.548	2.54	0.909	--	-46.5	--	165	0.223	--	0.4973	38	19.1	--
362.57	0.893	2.87	0.0527	0.0705	--	1.27	--	0.21	15.5	--	--	--	--
367.19	0.897	2.87	0.0746	0.103	--	--	--	0.217	12.4	--	--	--	--
301.83	0.809	2.87	-0.0859	--	5.62	--	--	0.238	--	1	38	20.5	--
301.26	0.808	2.87	--	0.0917	5.58	--	--	0.234	11.9	1	38	20.5	--
367.85	0.896	2.87	0.0711	--	--	--	--	0.215	--	--	--	--	--
367.33	0.897	2.87	--	0.101	--	--	--	0.209	12.4	--	--	--	--
302.03	0.809	2.87	--	--	5.59	--	--	0.237	--	1	38	20.5	--
367.98	0.895	2.87	--	--	--	--	--	0.208	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	133.09	precipitation	0.1	90	> th	dose independent	rect.	13	1
4	133.09	precipitation	0.1	90	> th	dose dependent	rect.	13	1
7	138.04	radiation	10.0	10	< th	dose dependent	rect.	14	1
9	139.95	radiation	10.0	10	< th	dose independent	rect.	14	1
57	182.88	temperature	25.0	10	< th	dose dependent	rect.	13	1
114	222.55	temperature	25.0	10	< th	dose independent	rect.	13	1
125	223.35	humidity	80.0	10	> th	dose dependent	rect.	14	1
156	231.84	humidity	80.0	10	> th	dose independent	rect.	14	1
175	234.80	atmosphere	1005.0	10	> th	dose dependent	rect.	13	1
283	257.21	atmosphere	1010.0	270	> th	dose independent	rect.	12	1
415	278.18	wind	3.0	90	< th	dose independent	rect.	13	1
425	279.08	wind	3.0	10	< th	dose independent	rect.	14	1
496	288.58	atmosphere	1015.0	1440	> th	dose independent	rect.	14	1
502	288.58	atmosphere	1015.0	1440	> th	dose dependent	rect.	14	1
519	289.47	temperature	25.0	30	< th	dose dependent	rect.	10	5
525	290.04	atmosphere	1010.0	720	> th	dose dependent	rect.	2	1
526	290.16	atmosphere	1015.0	1440	< th	dose independent	rect.	14	5
538	290.91	atmosphere	1015.0	1440	< th	dose independent	rect.	14	1
543	291.16	wind	3.0	10	< th	dose dependent	rect.	14	1
566	292.69	precipitation	0.1	90	> th	dose dependent	sin	1	NA
646	298.21	atmosphere	1005.0	30	> th	dose independent	rect.	13	1
779	304.64	precipitation	0.1	90	< th	dose independent	sin	0	NA
780	304.64	precipitation	0.1	90	< th	dose dependent	sin	0	NA
822	306.43	precipitation	0.1	90	> th	dose independent	sin	0	NA
932	310.87	radiation	10.0	270	< th	dose independent	rect.	10	19
968	312.24	temperature	25.0	30	< th	dose dependent	rect.	8	7