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Os09g0116900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.44 (0.0526) R2 : 0.613
β1 : -3.22 (0.163) R2dD : 0.506 R2D : 0.0758
β2 : 1.19 (0.0925) R2dC : 0.142 R2C : 0.14
β3 : -7.7 (0.757) R2dE : 1.45 R2E : -1.78
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -17.4 (2.01) R2dD*E : 1.04 R2D*E : -0.734
γ1 : -1.35 (0.0818) R2dN8 : 0.337 R2N8 : 0.0503
σ : 0.686
deviance : 216.99
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C
peak time of C : 20.4
E
wheather : radiation
threshold : 0.5223
memory length : 1507
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.06
open length of G : 9.25

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
216.47 0.691 7.44 -3.2 1.19 -7.67 0.469 -17.4 -1.35 20.5 0.5156 1500 8.07 9.26
249.96 0.736 7.8 -3.27 1.23 -2.4 -0.521 -- -1.55 21.2 0.8583 1049 12.9 4.44
216.99 0.686 7.44 -3.22 1.19 -7.7 -- -17.4 -1.35 20.4 0.5223 1507 8.06 9.25
240.44 0.722 7.8 -2.64 1.31 -2.02 -- -- -1.52 20.8 2.075 1053 12.7 4.7
295.63 0.801 7.42 -3.2 -- -7.65 -- -17.2 -1.35 -- 0.5011 1379 8.05 9.27
274.2 0.776 7.72 -2.23 1.17 -- 0.394 -- -1.21 20.4 -- -- -- --
274.66 0.776 7.72 -2.24 1.17 -- -- -- -1.21 20.3 -- -- -- --
320.31 0.834 7.73 -2.53 -- -1.73 -- -- -1.5 -- 3.301 1166 11.7 6.4
373.08 0.9 7.72 -- 1.24 -1.58 -- -- -1.24 20.9 9.999 1183 12.9 4.94
350.51 0.875 7.69 -2.25 -- -- -- -- -1.22 -- -- -- -- --
407.39 0.944 7.67 -- 1.18 -- -- -- -0.961 20.2 -- -- -- --
427.25 0.963 7.76 -- -- -2.35 -- -- -1.27 -- 9.956 1338 14.2 6.55
484.18 1.03 7.64 -- -- -- -- -- -0.973 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 229.14 humidity 80 1440 < th dose independent rect. 8 7
3 230.39 humidity 80 1440 > th dose independent rect. 8 8
8 230.85 humidity 80 1440 > th dose independent rect. 8 14
17 231.30 humidity 80 1440 > th dose independent sin 0 NA
29 231.64 humidity 80 1440 < th dose independent sin 0 NA
32 231.67 humidity 80 1440 > th dose independent rect. 11 3
34 231.70 radiation 1 1440 < th dose dependent rect. 8 9
39 231.78 humidity 80 1440 < th dose independent rect. 8 13
44 231.98 wind 3 43200 > th dose independent rect. 6 3
48 232.04 humidity 80 1440 > th dose independent rect. 2 20
65 232.40 wind 3 43200 > th dose independent rect. 7 1
66 232.44 humidity 80 1440 > th dose independent rect. 2 14
73 232.53 wind 3 43200 < th dose independent rect. 6 3
94 233.00 radiation 1 1440 < th dose independent rect. 11 1
95 233.00 radiation 1 1440 < th dose dependent rect. 11 1
96 233.01 humidity 80 1440 < th dose independent rect. 11 3
125 233.38 humidity 70 720 > th dose dependent rect. 19 3
159 233.80 humidity 80 1440 > th dose independent rect. 19 22
199 234.20 radiation 20 1440 < th dose independent rect. 11 3
234 234.50 wind 5 43200 < th dose dependent rect. 6 3
235 234.51 wind 3 14400 > th dose dependent rect. 8 1
278 234.89 humidity 80 14400 < th dose independent rect. 16 1
280 234.91 humidity 90 720 > th dose dependent rect. 20 1
283 234.93 humidity 90 14400 > th dose independent rect. 21 2
297 235.03 radiation 20 1440 < th dose independent rect. 11 6
304 235.10 humidity 80 1440 < th dose independent rect. 19 22
314 235.20 radiation 20 1440 < th dose independent rect. 11 8
315 235.20 radiation 20 1440 < th dose independent rect. 11 14
316 235.21 radiation 20 1440 < th dose independent rect. 11 12
318 235.22 radiation 20 1440 < th dose independent rect. 11 10
325 235.22 radiation 20 1440 < th dose dependent rect. 11 6
333 235.25 radiation 1 1440 < th dose independent rect. 9 4
334 235.25 radiation 1 1440 < th dose dependent rect. 9 4
339 235.30 humidity 80 14400 > th dose independent rect. 16 2
357 235.41 radiation 20 1440 < th dose dependent rect. 11 14
360 235.42 wind 1 43200 > th dose dependent rect. 6 3
364 235.44 radiation 20 1440 < th dose dependent rect. 11 12
368 235.45 radiation 20 1440 < th dose dependent rect. 11 10
387 235.58 humidity 80 1440 > th dose independent no NA NA
394 235.59 humidity 70 1440 > th dose dependent rect. 9 6
402 235.67 humidity 80 1440 > th dose independent rect. 11 23
403 235.67 humidity 80 14400 > th dose dependent rect. 17 2
424 235.84 radiation 20 1440 < th dose dependent rect. 11 3
425 235.85 humidity 60 1440 > th dose dependent rect. 9 13
436 235.91 wind 3 43200 < th dose dependent rect. 2 8
459 236.07 humidity 70 1440 > th dose dependent rect. 10 4
524 236.34 radiation 1 1440 > th dose independent rect. 9 5
526 236.35 temperature 20 14400 > th dose independent rect. 20 4
532 236.36 temperature 20 14400 < th dose independent rect. 19 6
558 236.44 temperature 20 14400 > th dose independent rect. 18 7
562 236.45 temperature 20 14400 < th dose independent rect. 20 4
590 236.57 humidity 90 720 > th dose dependent rect. 20 3
633 236.77 temperature 25 14400 < th dose dependent rect. 13 1
686 236.99 radiation 20 1440 < th dose dependent sin 19 NA
700 237.06 humidity 90 14400 < th dose independent rect. 13 10
710 237.08 humidity 80 1440 < th dose independent no NA NA
764 237.26 radiation 20 1440 < th dose independent sin 18 NA
768 237.26 humidity 60 1440 > th dose dependent sin 21 NA
777 237.28 humidity 50 1440 > th dose dependent rect. 13 1
782 237.29 radiation 1 1440 > th dose independent rect. 13 1
814 237.36 humidity 80 14400 > th dose dependent rect. 13 7
815 237.36 humidity 90 1440 < th dose dependent rect. 9 14
824 237.40 wind 1 43200 < th dose independent rect. 1 1
833 237.41 radiation 20 1440 < th dose dependent rect. 8 10
854 237.46 radiation 20 1440 < th dose dependent rect. 8 17
859 237.47 radiation 20 1440 < th dose dependent rect. 8 15
860 237.48 radiation 20 1440 < th dose dependent rect. 8 13
886 237.54 humidity 80 14400 > th dose dependent rect. 12 10
890 237.55 humidity 80 14400 > th dose dependent rect. 10 12
916 237.60 humidity 90 14400 < th dose independent rect. 21 1
929 237.64 humidity 80 1440 < th dose independent rect. 11 23
972 237.75 humidity 80 43200 > th dose independent rect. 4 3
982 237.78 humidity 90 14400 < th dose independent rect. 17 6
998 237.82 temperature 25 14400 < th dose dependent rect. 13 7