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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0116600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.82 (0.0301) R2 : 0.278
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.595 (0.0772) R2dC : 0.0933 R2C : 0.0874
β3 : -1.48 (0.138) R2dE : 0.195 R2E : 0.177
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.125 (0.0643) R2dN8 : 0.00978 R2N8 : -0.0081
σ : 0.561
deviance : 145.23
__
_____
C
peak time of C : 19.5
E
wheather : precipitation
threshold : 0.837
memory length : 2380
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
138.31 0.553 3.77 0.55 0.601 -0.819 0.768 -3.82 0.16 19.5 0.1893 4357 -- --
138.18 0.547 3.81 0.531 0.585 -1.27 0.649 -- 0.175 19.4 0.9793 2380 -- --
139.07 0.549 3.77 0.563 0.608 -0.612 -- -2.99 0.159 19.8 0.9999 4379 -- --
139.31 0.55 3.81 0.516 0.599 -1.27 -- -- 0.183 19.6 0.9686 2380 -- --
158.15 0.586 3.76 0.568 -- -0.592 -- -2.95 0.148 -- 1 4447 -- --
161.68 0.596 3.83 0.889 0.586 -- 0.615 -- 0.0899 19.6 -- -- -- --
162.68 0.597 3.83 0.873 0.585 -- -- -- 0.0901 19.8 -- -- -- --
158.1 0.586 3.8 0.517 -- -1.24 -- -- 0.161 -- 1 2360 -- --
145.23 0.561 3.82 -- 0.595 -1.48 -- -- 0.125 19.5 0.837 2380 -- --
181.24 0.629 3.82 0.866 -- -- -- -- 0.0819 -- -- -- -- --
182.77 0.632 3.85 -- 0.579 -- -- -- -0.00717 19.9 -- -- -- --
163.89 0.596 3.8 -- -- -1.48 -- -- 0.126 -- 0.9908 2360 -- --
201.02 0.662 3.84 -- -- -- -- -- -0.0142 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 130.98 precipitation 0.1 4320 > th dose dependent rect. 13 3
18 132.45 precipitation 0.1 4320 > th dose dependent rect. 5 9
19 132.50 wind 1.0 43200 > th dose independent rect. 1 1
21 132.55 precipitation 0.1 4320 > th dose dependent rect. 7 7
22 132.59 precipitation 0.1 4320 > th dose independent rect. 12 2
23 132.64 precipitation 0.1 4320 < th dose independent rect. 13 1
24 132.64 precipitation 0.1 4320 < th dose dependent rect. 13 1
69 133.83 wind 1.0 43200 < th dose independent rect. 1 1
76 134.34 precipitation 0.1 1440 < th dose independent rect. 5 3
77 134.34 precipitation 0.1 1440 < th dose dependent rect. 5 3
79 134.48 precipitation 0.1 1440 < th dose independent rect. 5 1
80 134.48 precipitation 0.1 1440 < th dose dependent rect. 5 1
84 134.90 precipitation 0.1 1440 > th dose dependent rect. 5 3
89 135.39 wind 3.0 43200 < th dose dependent rect. 24 4
91 135.41 precipitation 0.1 4320 < th dose independent rect. 4 13
93 135.41 precipitation 0.1 4320 < th dose dependent rect. 4 13
94 135.50 precipitation 0.1 1440 > th dose independent rect. 5 3
95 135.50 precipitation 0.1 4320 > th dose independent rect. 4 13
98 135.62 precipitation 0.1 4320 < th dose independent rect. 4 10
99 135.62 precipitation 0.1 4320 < th dose dependent rect. 4 10
101 135.81 precipitation 0.1 1440 > th dose independent rect. 5 1
102 135.81 precipitation 0.1 4320 > th dose independent rect. 4 10
106 135.89 wind 1.0 4320 > th dose independent rect. 17 2
114 136.01 precipitation 0.1 4320 > th dose independent rect. 7 7
117 136.04 precipitation 0.1 4320 > th dose dependent rect. 18 23
136 136.51 wind 3.0 43200 < th dose independent rect. 20 12
139 136.53 wind 3.0 43200 < th dose independent rect. 21 10
147 136.66 wind 3.0 43200 < th dose independent sin 9 NA
157 136.75 wind 3.0 43200 > th dose independent rect. 19 14
158 136.75 wind 5.0 43200 < th dose dependent rect. 20 11
160 136.79 precipitation 0.1 4320 < th dose independent rect. 7 7
162 136.79 precipitation 0.1 4320 < th dose dependent rect. 7 7
165 136.81 humidity 90.0 4320 < th dose independent rect. 13 1
177 136.91 wind 3.0 43200 > th dose independent sin 9 NA
178 136.91 precipitation 0.1 1440 > th dose dependent rect. 5 1
187 136.96 precipitation 0.1 4320 > th dose independent sin 0 NA
201 137.03 precipitation 0.1 4320 > th dose independent rect. 3 20
202 137.04 precipitation 0.1 4320 < th dose independent rect. 3 20
203 137.04 precipitation 0.1 4320 < th dose dependent rect. 3 20
208 137.07 precipitation 0.1 4320 < th dose independent sin 0 NA
212 137.07 precipitation 0.1 4320 < th dose dependent sin 0 NA
217 137.09 precipitation 0.1 4320 > th dose dependent rect. 19 2
223 137.12 wind 5.0 43200 < th dose dependent sin 9 NA
254 137.27 wind 9.0 14400 > th dose dependent rect. 9 2
281 137.38 wind 3.0 43200 > th dose independent rect. 23 11
305 137.46 wind 3.0 43200 < th dose independent rect. 23 14
329 137.57 wind 3.0 43200 > th dose independent rect. 5 2
330 137.57 wind 3.0 43200 < th dose independent rect. 5 2
377 137.71 precipitation 0.1 4320 > th dose independent rect. 13 8
386 137.74 precipitation 0.1 4320 > th dose independent rect. 18 23
387 137.74 precipitation 0.1 4320 < th dose independent rect. 18 23
388 137.74 precipitation 0.1 4320 < th dose dependent rect. 18 23
391 137.76 precipitation 0.1 4320 < th dose independent rect. 13 8
393 137.76 precipitation 0.1 4320 < th dose dependent rect. 13 8
423 137.87 wind 3.0 43200 > th dose independent rect. 23 14
424 137.87 precipitation 0.1 4320 < th dose independent rect. 12 20
428 137.87 precipitation 0.1 4320 < th dose dependent rect. 12 20
442 137.91 wind 1.0 4320 < th dose independent rect. 17 2
466 137.95 wind 5.0 43200 < th dose dependent rect. 22 15
471 137.96 precipitation 0.1 4320 > th dose independent rect. 12 20
485 137.99 precipitation 0.1 4320 < th dose independent rect. 21 23
490 137.99 precipitation 0.1 4320 < th dose dependent rect. 21 23
491 138.00 precipitation 0.1 4320 > th dose independent rect. 19 1
496 138.00 precipitation 0.1 4320 > th dose independent rect. 21 23
509 138.04 precipitation 0.1 4320 < th dose independent rect. 19 1
510 138.04 wind 3.0 43200 < th dose independent rect. 24 4
516 138.04 precipitation 0.1 4320 < th dose dependent rect. 19 1
615 138.22 precipitation 0.1 4320 > th dose dependent rect. 22 19
632 138.26 precipitation 0.1 4320 > th dose dependent sin 2 NA
653 138.29 wind 9.0 14400 > th dose independent rect. 9 2
660 138.29 precipitation 0.1 4320 > th dose dependent rect. 18 8
667 138.31 wind 3.0 43200 > th dose independent rect. 5 5
680 138.32 precipitation 0.1 4320 > th dose dependent rect. 16 1
730 138.39 precipitation 0.1 4320 > th dose independent no NA NA
731 138.39 precipitation 0.1 4320 < th dose independent no NA NA
736 138.39 precipitation 0.1 4320 < th dose dependent no NA NA
744 138.41 precipitation 0.1 4320 > th dose independent rect. 7 23
751 138.43 precipitation 0.1 4320 < th dose independent rect. 7 23
754 138.43 precipitation 0.1 4320 < th dose dependent rect. 7 23
755 138.44 wind 3.0 43200 < th dose independent rect. 5 5
769 138.47 wind 1.0 43200 > th dose dependent rect. 19 12
771 138.48 precipitation 0.1 4320 > th dose independent rect. 16 23
772 138.48 precipitation 0.1 4320 < th dose independent rect. 16 23
773 138.48 precipitation 0.1 4320 < th dose dependent rect. 16 23
808 138.54 wind 1.0 43200 > th dose dependent rect. 5 2
844 138.62 wind 1.0 43200 > th dose dependent sin 10 NA
909 138.79 precipitation 0.1 4320 > th dose dependent rect. 18 14
913 138.80 wind 7.0 43200 < th dose dependent rect. 5 2
925 138.82 precipitation 0.1 4320 > th dose dependent rect. 3 23
930 138.84 precipitation 0.1 4320 > th dose dependent rect. 18 12
954 138.88 precipitation 0.1 4320 > th dose independent rect. 18 3
960 138.89 wind 9.0 14400 < th dose independent rect. 9 2
963 138.89 wind 3.0 43200 > th dose independent rect. 4 9
967 138.90 precipitation 0.1 14400 < th dose independent rect. 17 1
970 138.90 precipitation 0.1 14400 < th dose dependent rect. 17 1
979 138.92 precipitation 0.1 4320 > th dose dependent rect. 13 19
989 138.94 precipitation 0.1 4320 < th dose independent rect. 18 3
991 138.94 precipitation 0.1 4320 < th dose dependent rect. 18 3