Os09g0115900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0115900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 218.63 | 0.695 | 10.7 | 1.9 | 5.87 | 5.84 | -4.84 | -6.46 | 1.01 | 19.6 | 2.108 | 735 | -- | -- |
| 242.39 | 0.725 | 10.8 | 1.87 | 6.08 | 6.32 | -1.55 | -- | 0.995 | 19.7 | 1.318 | 773 | -- | -- |
| 242.94 | 0.726 | 10.8 | 1.96 | 6.38 | 6.57 | -- | -1.08 | 0.942 | 19.6 | 1.813 | 767 | -- | -- |
| 243.94 | 0.727 | 10.8 | 1.9 | 6.38 | 6.58 | -- | -- | 0.936 | 19.7 | 1.777 | 777 | -- | -- |
| 302.11 | 0.814 | 10.6 | 1.47 | -- | 2.04 | -- | -2.34 | 0.79 | -- | 2.814 | 1605 | -- | -- |
| 303.88 | 0.817 | 10.7 | 1.28 | 2.68 | -- | -2.47 | -- | 0.695 | 22.8 | -- | -- | -- | -- |
| 329.37 | 0.85 | 10.7 | 1.38 | 2.7 | -- | -- | -- | 0.703 | 22.8 | -- | -- | -- | -- |
| 322.2 | 0.84 | 10.6 | 1.39 | -- | 2.11 | -- | -- | 0.77 | -- | 6.842 | 8 | -- | -- |
| 331.38 | 0.848 | 10.8 | -- | 5.46 | 5.18 | -- | -- | 0.709 | 19.7 | 2.254 | 730 | -- | -- |
| 779.03 | 1.3 | 10.6 | 1.44 | -- | -- | -- | -- | 0.72 | -- | -- | -- | -- | -- |
| 379.64 | 0.911 | 10.7 | -- | 2.71 | -- | -- | -- | 0.55 | 22.8 | -- | -- | -- | -- |
| 371.09 | 0.897 | 10.6 | -- | -- | 2.17 | -- | -- | 0.663 | -- | 7.137 | 6 | -- | -- |
| 833.44 | 1.35 | 10.7 | -- | -- | -- | -- | -- | 0.561 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 205.85 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 10 | 208.61 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 28 | 211.03 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 51 | 213.41 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 54 | 213.84 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 23 |
| 68 | 215.05 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 23 |
| 83 | 216.30 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 88 | 216.62 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 23 |
| 110 | 218.49 | humidity | 60 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 118 | 218.95 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 11 |
| 126 | 219.31 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 9 |
| 131 | 219.54 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 144 | 219.87 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 23 |
| 159 | 220.38 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 23 |
| 171 | 220.67 | humidity | 80 | 1440 | < th | dose dependent | sin | 5 | NA |
| 179 | 220.94 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 15 |
| 184 | 221.10 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 215 | 221.46 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 226 | 221.63 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 14 |
| 245 | 221.78 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 296 | 222.03 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 23 |
| 303 | 222.13 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 328 | 222.43 | radiation | 1 | 720 | > th | dose independent | sin | 23 | NA |
| 329 | 222.43 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 23 |
| 380 | 223.15 | humidity | 50 | 1440 | > th | dose dependent | sin | 2 | NA |
| 395 | 223.59 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 398 | 223.61 | radiation | 1 | 720 | < th | dose independent | sin | 22 | NA |
| 420 | 223.97 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 23 |
| 474 | 224.63 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 509 | 225.30 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 513 | 225.33 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 23 |
| 522 | 225.55 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 528 | 225.60 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 532 | 225.64 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 13 |
| 549 | 225.85 | radiation | 1 | 720 | < th | dose independent | sin | 14 | NA |
| 576 | 226.25 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 17 |
| 612 | 226.69 | radiation | 1 | 720 | > th | dose independent | sin | 14 | NA |
| 640 | 226.87 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 663 | 227.08 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 17 |
| 714 | 227.60 | humidity | 70 | 720 | > th | dose dependent | rect. | 7 | 15 |
| 740 | 227.82 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 754 | 228.04 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 828 | 228.77 | humidity | 70 | 1440 | > th | dose independent | sin | 8 | NA |
| 941 | 229.59 | humidity | 70 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 942 | 229.60 | radiation | 1 | 720 | < th | dose dependent | sin | 23 | NA |