Os09g0115500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CBS domain containing protein.
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Os09g0115500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CBS domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.74 | 0.335 | 13.2 | 0.508 | 1.83 | 1.68 | -0.215 | 0.887 | 0.0437 | 15.3 | 27.22 | 270 | -- | -- |
| 51.62 | 0.335 | 13.2 | 0.664 | 1.81 | 1.68 | -0.43 | -- | 0.0889 | 15.4 | 27.5 | 319 | -- | -- |
| 50.81 | 0.332 | 13.2 | 0.479 | 1.86 | 1.69 | -- | 1.03 | 0.0333 | 15.3 | 27.4 | 252 | -- | -- |
| 52.19 | 0.336 | 13.2 | 0.657 | 1.82 | 1.66 | -- | -- | 0.0767 | 15.4 | 27.6 | 306 | -- | -- |
| 142.08 | 0.555 | 13.2 | 0.547 | -- | 2.1 | -- | 1.15 | 0.0466 | -- | 27.1 | 1072 | -- | -- |
| 89.8 | 0.444 | 13.3 | 0.244 | 1.44 | -- | -0.544 | -- | -0.281 | 15 | -- | -- | -- | -- |
| 90.79 | 0.446 | 13.3 | 0.232 | 1.44 | -- | -- | -- | -0.284 | 15 | -- | -- | -- | -- |
| 142.18 | 0.555 | 13.2 | 0.772 | -- | 2.01 | -- | -- | 0.106 | -- | 27.63 | 1068 | -- | -- |
| 62.51 | 0.368 | 13.2 | -- | 1.72 | 1.37 | -- | -- | -0.0336 | 15.3 | 27.52 | 292 | -- | -- |
| 209.12 | 0.676 | 13.3 | 0.171 | -- | -- | -- | -- | -0.321 | -- | -- | -- | -- | -- |
| 92.21 | 0.449 | 13.3 | -- | 1.43 | -- | -- | -- | -0.31 | 15 | -- | -- | -- | -- |
| 156.4 | 0.582 | 13.2 | -- | -- | 1.73 | -- | -- | -0.00936 | -- | 27.7 | 1070 | -- | -- |
| 209.89 | 0.676 | 13.3 | -- | -- | -- | -- | -- | -0.34 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 3 | 50.45 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 21 |
| 24 | 51.62 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 33 | 51.97 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 34 | 51.99 | temperature | 15 | 1440 | > th | dose dependent | rect. | 19 | 10 |
| 43 | 52.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 17 |
| 51 | 52.09 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 82 | 52.20 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 20 |
| 115 | 52.29 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 5 |
| 175 | 52.41 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 312 | 52.71 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 344 | 52.78 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 574 | 53.26 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 653 | 53.39 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 10 |
| 758 | 53.57 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 808 | 53.66 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 833 | 53.71 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 6 |
| 838 | 53.72 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 990 | 53.92 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |