Os09g0113000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os09g0113000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.81 | 0.422 | 8.07 | 2.14 | 0.305 | 1.4 | -0.971 | -1.03 | 0.774 | 8.98 | 28.9 | 37 | -- | -- |
| 82.13 | 0.422 | 8.09 | 1.95 | 0.301 | 1.37 | -0.877 | -- | 0.727 | 8.47 | 28.51 | 37 | -- | -- |
| 83.64 | 0.426 | 8.08 | 2.06 | 0.299 | 1.45 | -- | -0.641 | 0.769 | 9.7 | 28.76 | 49 | -- | -- |
| 84.17 | 0.427 | 8.09 | 1.95 | 0.333 | 1.46 | -- | -- | 0.743 | 9.71 | 28.64 | 20 | -- | -- |
| 87.61 | 0.436 | 8.08 | 2.12 | -- | 1.37 | -- | -1.02 | 0.766 | -- | 28.97 | 176 | -- | -- |
| 112.55 | 0.497 | 8.16 | 1.59 | 0.471 | -- | -0.754 | -- | 0.432 | 5.42 | -- | -- | -- | -- |
| 113.79 | 0.5 | 8.16 | 1.59 | 0.467 | -- | -- | -- | 0.435 | 4.99 | -- | -- | -- | -- |
| 88.85 | 0.439 | 8.1 | 1.93 | -- | 1.45 | -- | -- | 0.742 | -- | 28.35 | 102 | -- | -- |
| 173.62 | 0.617 | 8.17 | -- | 0.367 | 0.659 | -- | -- | 0.376 | 6.41 | 28.64 | 20 | -- | -- |
| 125.28 | 0.523 | 8.17 | 1.61 | -- | -- | -- | -- | 0.447 | -- | -- | -- | -- | -- |
| 180.45 | 0.628 | 8.2 | -- | 0.496 | -- | -- | -- | 0.258 | 4.88 | -- | -- | -- | -- |
| 180.14 | 0.625 | 8.17 | -- | -- | 0.763 | -- | -- | 0.402 | -- | 29.14 | 54 | -- | -- |
| 193.43 | 0.649 | 8.21 | -- | -- | -- | -- | -- | 0.269 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 19 |
| 13 | 80.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 19 | 80.24 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 21 | 80.25 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 65 | 80.73 | temperature | 15 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 86 | 80.84 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 89 | 80.84 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 97 | 80.91 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 111 | 80.98 | temperature | 10 | 720 | > th | dose dependent | sin | 20 | NA |
| 147 | 81.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 169 | 81.28 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 175 | 81.33 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 184 | 81.39 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 192 | 81.44 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 21 |
| 219 | 81.56 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 233 | 81.62 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 262 | 81.78 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 275 | 81.84 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 277 | 81.85 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 278 | 81.85 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 316 | 82.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 15 |
| 341 | 82.11 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 6 |
| 368 | 82.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 14 |
| 375 | 82.23 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 384 | 82.28 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 15 |
| 386 | 82.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 395 | 82.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 16 |
| 396 | 82.33 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 401 | 82.35 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 411 | 82.38 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 445 | 82.51 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 455 | 82.54 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 464 | 82.56 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 491 | 82.63 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 19 |
| 498 | 82.64 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 508 | 82.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 512 | 82.69 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 514 | 82.70 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 518 | 82.72 | temperature | 30 | 720 | < th | dose dependent | sin | 19 | NA |
| 583 | 82.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 641 | 83.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 22 |
| 648 | 83.11 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 661 | 83.16 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 687 | 83.21 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 734 | 83.32 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 745 | 83.35 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 746 | 83.36 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 766 | 83.39 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 799 | 83.46 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 824 | 83.50 | radiation | 1 | 720 | > th | dose independent | sin | 14 | NA |
| 869 | 83.59 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 913 | 83.70 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 11 |
| 959 | 83.77 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 969 | 83.80 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 10 |