Os09g0112400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DCL protein, chloroplast precursor (Defective chloroplasts and leaves protein).
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Os09g0112400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DCL protein, chloroplast precursor (Defective chloroplasts and leaves protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.26 | 0.385 | 8.42 | 1.01 | 1.17 | 0.675 | -0.158 | 0.122 | -0.11 | 17.8 | 10.01 | 267 | -- | -- |
| 66.75 | 0.381 | 8.43 | 1 | 1.15 | 0.731 | -0.301 | -- | -0.125 | 17.9 | 10.04 | 229 | -- | -- |
| 66.47 | 0.38 | 8.42 | 1.02 | 1.15 | 0.711 | -- | 0.143 | -0.107 | 18 | 10 | 224 | -- | -- |
| 66.18 | 0.379 | 8.42 | 0.994 | 1.23 | 0.691 | -- | -- | -0.106 | 18.1 | 10.01 | 205 | -- | -- |
| 76.2 | 0.407 | 8.44 | 0.766 | -- | 1.68 | -- | -0.223 | -0.305 | -- | 2.045 | 580 | -- | -- |
| 75.39 | 0.407 | 8.41 | 1.11 | 1.62 | -- | 0.0731 | -- | -0.0477 | 16.6 | -- | -- | -- | -- |
| 75.4 | 0.407 | 8.41 | 1.11 | 1.62 | -- | -- | -- | -0.0473 | 16.6 | -- | -- | -- | -- |
| 72.75 | 0.397 | 8.41 | 1.04 | -- | 1.74 | -- | -- | -0.152 | -- | 2.09 | 577 | -- | -- |
| 92.38 | 0.448 | 8.46 | -- | 1.13 | 0.78 | -- | -- | -0.242 | 18.2 | 10 | 225 | -- | -- |
| 215.64 | 0.686 | 8.4 | 1.05 | -- | -- | -- | -- | -0.0899 | -- | -- | -- | -- | -- |
| 108.07 | 0.486 | 8.44 | -- | 1.6 | -- | -- | -- | -0.171 | 16.6 | -- | -- | -- | -- |
| 98.24 | 0.462 | 8.44 | -- | -- | 1.78 | -- | -- | -0.231 | -- | 0.3892 | 577 | -- | -- |
| 244.78 | 0.73 | 8.42 | -- | -- | -- | -- | -- | -0.206 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.64 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 2 | 59.82 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 3 | 60.04 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 4 | 60.05 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 5 | 7 |
| 12 | 60.39 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 14 | 60.49 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 17 | 60.53 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 18 | 60.54 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 18 |
| 38 | 61.09 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 51 | 61.22 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 7 |
| 56 | 61.28 | radiation | 1.0 | 270 | < th | dose dependent | sin | 2 | NA |
| 68 | 61.40 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 14 |
| 82 | 61.52 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 86 | 61.57 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 9 |
| 102 | 61.68 | radiation | 10.0 | 270 | > th | dose independent | rect. | 16 | 20 |
| 113 | 61.80 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 24 | 6 |
| 119 | 61.83 | radiation | 1.0 | 270 | < th | dose independent | rect. | 2 | 16 |
| 127 | 61.87 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 137 | 61.93 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 2 | 6 |
| 149 | 62.01 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 19 |
| 159 | 62.09 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 19 |
| 161 | 62.10 | temperature | 25.0 | 90 | < th | dose independent | rect. | 4 | 17 |
| 164 | 62.12 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 19 |
| 184 | 62.22 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 193 | 62.26 | radiation | 1.0 | 270 | > th | dose independent | sin | 3 | NA |
| 196 | 62.27 | radiation | 1.0 | 270 | < th | dose independent | sin | 3 | NA |
| 213 | 62.35 | radiation | 10.0 | 270 | > th | dose independent | sin | 6 | NA |
| 237 | 62.52 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 18 |
| 280 | 62.80 | radiation | 20.0 | 270 | < th | dose independent | rect. | 11 | 19 |
| 290 | 62.82 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 12 |
| 303 | 62.86 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 8 | 18 |
| 306 | 62.86 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 8 | 18 |
| 313 | 62.88 | radiation | 10.0 | 270 | > th | dose independent | rect. | 7 | 4 |
| 314 | 62.88 | wind | 7.0 | 270 | < th | dose independent | rect. | 5 | 21 |
| 352 | 62.98 | radiation | 20.0 | 270 | < th | dose dependent | sin | 6 | NA |
| 377 | 63.07 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 18 |
| 378 | 63.08 | radiation | 10.0 | 270 | > th | dose independent | rect. | 8 | 2 |
| 382 | 63.10 | wind | 5.0 | 30 | < th | dose independent | rect. | 2 | 6 |
| 383 | 63.10 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 7 |
| 385 | 63.10 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 390 | 63.13 | temperature | 25.0 | 30 | > th | dose dependent | sin | 6 | NA |
| 393 | 63.15 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 400 | 63.17 | humidity | 50.0 | 270 | > th | dose independent | rect. | 13 | 17 |
| 417 | 63.23 | radiation | 10.0 | 90 | > th | dose independent | rect. | 8 | 6 |
| 419 | 63.25 | wind | 5.0 | 270 | < th | dose independent | rect. | 24 | 6 |
| 428 | 63.28 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 17 |
| 440 | 63.31 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 19 |
| 442 | 63.31 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 463 | 63.39 | radiation | 10.0 | 10 | > th | dose independent | rect. | 8 | 7 |
| 513 | 63.53 | temperature | 25.0 | 10 | > th | dose independent | rect. | 8 | 5 |
| 515 | 63.53 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 2 | 18 |
| 522 | 63.55 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 4 | 16 |
| 538 | 63.56 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 19 | 19 |
| 541 | 63.57 | temperature | 20.0 | 10 | > th | dose dependent | sin | 2 | NA |
| 552 | 63.59 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 2 | 20 |
| 564 | 63.63 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 571 | 63.64 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 6 |
| 572 | 63.64 | humidity | 50.0 | 270 | > th | dose independent | rect. | 11 | 9 |
| 574 | 63.64 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 6 |
| 578 | 63.65 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 18 |
| 599 | 63.69 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 6 |
| 601 | 63.69 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 6 |
| 602 | 63.69 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 6 |
| 604 | 63.69 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 6 |
| 605 | 63.69 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 2 | 6 |
| 606 | 63.69 | temperature | 10.0 | 30 | > th | dose independent | rect. | 8 | 18 |
| 610 | 63.70 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 6 |
| 613 | 63.70 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 619 | 63.70 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 622 | 63.70 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 625 | 63.70 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 18 |
| 645 | 63.73 | temperature | 30.0 | 270 | < th | dose independent | rect. | 13 | 17 |
| 656 | 63.75 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 21 |
| 661 | 63.75 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 692 | 63.82 | wind | 1.0 | 270 | > th | dose independent | rect. | 24 | 6 |
| 693 | 63.82 | wind | 1.0 | 30 | > th | dose independent | rect. | 8 | 18 |
| 696 | 63.82 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 730 | 63.90 | wind | 5.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 752 | 63.94 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 6 |
| 756 | 63.94 | temperature | 30.0 | 10 | < th | dose dependent | sin | 1 | NA |
| 757 | 63.94 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 6 |
| 781 | 64.00 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 783 | 64.00 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 784 | 64.00 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 787 | 64.00 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 788 | 64.00 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 789 | 64.00 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 804 | 64.00 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 18 |
| 812 | 64.01 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 8 | 2 |
| 866 | 64.09 | radiation | 40.0 | 270 | < th | dose independent | rect. | 1 | 15 |
| 892 | 64.13 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 3 |
| 920 | 64.14 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 939 | 64.17 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 6 |
| 954 | 64.20 | wind | 9.0 | 90 | < th | dose dependent | rect. | 2 | 6 |
| 959 | 64.21 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 963 | 64.21 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 13 | 19 |
| 972 | 64.22 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 16 | 19 |
| 999 | 64.25 | humidity | 80.0 | 30 | > th | dose independent | rect. | 4 | 16 |