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Os09g0112300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.25 (0.0552) R2 : 0.714
β1 : 3.56 (0.25) R2dD : 0.236 R2D : 0.000511
β2 : 3.01 (0.134) R2dC : 0.387 R2C : 0.511
β3 : 2.39 (0.237) R2dE : 0.0939 R2E : 0.181
β4 : 3.23 (0.531) R2dD*C : 0.0306 R2D*C : -0.0258
β5 : -6.36 (0.866) R2dD*E : 0.0688 R2D*E : -0.0851
γ1 : 0.776 (0.125) R2dN8 : 0.0427 R2N8 : -0.0504
σ : 0.963
deviance : 419.86
__
_____
C
peak time of C : 23.2
E
wheather : temperature
threshold : 28.18
memory length : 8
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
419.86 0.963 7.25 3.56 3.01 2.39 3.23 -6.36 0.776 23.2 28.18 8 -- --
459.6 1.01 7.37 2.42 3.04 2.65 1.41 -- 0.531 23.3 25.91 38 -- --
454.35 1 7.31 3 2.96 2.49 -- -3.77 0.654 23.2 28.18 8 -- --
467.99 1.01 7.37 2.36 3.03 2.64 -- -- 0.524 23.3 25.96 37 -- --
898.33 1.4 7.17 3.43 -- 4.64 -- -3.31 1.02 -- 29.8 2 -- --
565.24 1.11 7.5 1.8 3.58 -- 1.34 -- -0.0365 23.7 -- -- -- --
572.96 1.12 7.51 1.75 3.57 -- -- -- -0.0428 23.7 -- -- -- --
918.84 1.41 7.21 2.93 -- 4.73 -- -- 0.951 -- 28.38 2 -- --
602.33 1.15 7.47 -- 3.23 1.76 -- -- 0.0939 23.5 25.9 7 -- --
1375.36 1.73 7.43 1.85 -- -- -- -- 0.00109 -- -- -- -- --
653.64 1.2 7.55 -- 3.59 -- -- -- -0.238 23.8 -- -- -- --
1130.7 1.57 7.32 -- -- 3.92 -- -- 0.478 -- 28.52 2 -- --
1465.94 1.79 7.47 -- -- -- -- -- -0.204 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 418.52 temperature 30 10 < th dose dependent rect. 23 23
2 418.63 temperature 30 10 < th dose dependent rect. 1 23
3 419.50 temperature 30 10 < th dose dependent rect. 13 23
6 421.11 temperature 15 10 > th dose dependent rect. 5 23
7 421.68 temperature 30 10 < th dose dependent rect. 17 23
8 422.35 temperature 15 90 > th dose dependent rect. 5 23
9 422.53 temperature 30 10 < th dose dependent rect. 11 23
10 422.58 temperature 30 10 < th dose dependent no NA NA
12 423.07 temperature 30 90 < th dose dependent rect. 11 23
16 424.22 temperature 30 10 < th dose dependent rect. 21 23
17 424.58 temperature 30 10 < th dose dependent rect. 15 23
21 425.11 temperature 30 10 < th dose dependent rect. 19 23
22 425.41 temperature 15 10 > th dose dependent no NA NA
25 425.89 temperature 25 10 < th dose dependent rect. 5 23
26 426.40 temperature 30 10 < th dose dependent rect. 9 23
42 428.34 temperature 30 10 < th dose dependent rect. 3 23
44 428.52 temperature 30 270 < th dose dependent rect. 9 22
48 428.80 temperature 25 10 < th dose dependent rect. 7 23
73 433.20 temperature 15 270 > th dose dependent rect. 13 23
78 433.76 temperature 15 90 > th dose dependent rect. 15 23
88 434.68 temperature 15 90 > th dose dependent rect. 2 23
96 435.57 temperature 15 10 > th dose dependent rect. 2 23
195 441.07 temperature 15 90 > th dose dependent rect. 20 23
197 441.50 temperature 15 90 > th dose dependent rect. 9 23
199 441.51 temperature 15 10 > th dose dependent rect. 9 23
206 441.93 temperature 20 90 < th dose independent rect. 23 22
225 442.86 temperature 15 10 > th dose dependent rect. 22 23
232 443.18 humidity 60 43200 > th dose independent rect. 7 3
235 443.47 humidity 60 43200 < th dose independent rect. 7 3
254 444.28 temperature 20 30 > th dose independent rect. 5 23
282 445.45 temperature 15 90 > th dose dependent rect. 22 23
287 445.53 humidity 50 43200 > th dose independent rect. 9 4
288 445.58 humidity 50 43200 > th dose independent rect. 10 2
293 445.75 atmosphere 1010 4320 < th dose independent rect. 11 1
307 446.25 atmosphere 1010 4320 > th dose independent rect. 11 1
318 446.54 humidity 50 43200 < th dose independent rect. 6 10
320 446.55 humidity 50 43200 < th dose independent rect. 9 6
321 446.55 humidity 50 43200 < th dose independent rect. 9 9
327 446.60 humidity 50 43200 > th dose independent rect. 6 9
349 446.82 humidity 50 43200 < th dose independent rect. 10 2
365 446.91 humidity 50 43200 > th dose independent rect. 1 14
366 446.91 humidity 80 43200 < th dose dependent rect. 19 11
373 446.94 humidity 50 43200 < th dose independent sin 0 NA
374 446.94 humidity 50 43200 < th dose independent rect. 20 20
384 447.01 humidity 50 43200 < th dose independent rect. 9 4
396 447.03 humidity 50 43200 < th dose independent rect. 9 12
408 447.09 humidity 50 43200 > th dose independent rect. 9 9
412 447.10 temperature 20 30 > th dose independent no NA NA
440 447.15 humidity 50 43200 > th dose independent sin 1 NA
508 447.41 humidity 50 43200 < th dose independent rect. 13 5
545 447.54 humidity 80 43200 < th dose independent sin 8 NA
580 447.61 humidity 80 43200 < th dose independent rect. 22 12
597 447.65 temperature 15 10 > th dose dependent rect. 15 23
600 447.67 humidity 80 43200 < th dose independent rect. 21 14
630 447.74 humidity 50 43200 < th dose independent rect. 17 23
641 447.78 humidity 50 43200 < th dose independent rect. 14 2
707 447.93 humidity 50 43200 < th dose independent rect. 17 16
736 448.01 humidity 50 43200 > th dose independent rect. 17 22
740 448.04 humidity 50 43200 < th dose independent no NA NA
832 448.24 humidity 80 43200 > th dose independent sin 11 NA
853 448.30 atmosphere 1010 4320 > th dose independent rect. 9 3
863 448.33 humidity 80 43200 > th dose independent rect. 16 16
870 448.35 humidity 80 43200 < th dose independent rect. 3 6
882 448.37 humidity 80 43200 < th dose dependent rect. 20 6
891 448.39 temperature 15 10 > th dose dependent rect. 20 23
911 448.46 humidity 50 43200 > th dose independent no NA NA
926 448.51 humidity 80 43200 > th dose independent rect. 20 13
930 448.52 radiation 30 4320 < th dose independent rect. 16 15
941 448.57 temperature 20 90 > th dose independent rect. 20 23
979 448.85 humidity 50 43200 > th dose independent rect. 17 16
984 448.89 humidity 80 43200 < th dose independent rect. 1 8
986 448.90 humidity 80 43200 > th dose independent rect. 20 5
993 448.94 humidity 80 43200 < th dose dependent sin 9 NA