Os09g0111300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os09g0111300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 350.18 | 0.879 | 3.64 | 0.714 | 1.82 | -1.55 | 1.94 | -1.55 | 0.266 | 9.92 | 19.9 | 3785 | -- | -- |
| 353.13 | 0.875 | 3.71 | 0.513 | 1.84 | -1.22 | 1.81 | -- | 0.211 | 9.92 | 20.2 | 3778 | -- | -- |
| 364.35 | 0.889 | 3.65 | 0.752 | 1.81 | -1.48 | -- | -1.25 | 0.261 | 9.76 | 19.99 | 3776 | -- | -- |
| 366.18 | 0.891 | 3.7 | 0.589 | 1.8 | -1.21 | -- | -- | 0.214 | 9.75 | 20.2 | 3768 | -- | -- |
| 550.88 | 1.09 | 3.69 | 0.765 | -- | -1.44 | -- | -1.33 | 0.274 | -- | 19.9 | 4474 | -- | -- |
| 380.38 | 0.914 | 3.63 | 1.23 | 1.76 | -- | 1.83 | -- | 0.541 | 9.83 | -- | -- | -- | -- |
| 392.96 | 0.928 | 3.62 | 1.3 | 1.76 | -- | -- | -- | 0.542 | 9.67 | -- | -- | -- | -- |
| 553.24 | 1.1 | 3.75 | 0.556 | -- | -1.18 | -- | -- | 0.218 | -- | 20.13 | 4466 | -- | -- |
| 371.55 | 0.898 | 3.73 | -- | 1.78 | -1.55 | -- | -- | 0.0894 | 9.75 | 20 | 5193 | -- | -- |
| 577.48 | 1.12 | 3.67 | 1.29 | -- | -- | -- | -- | 0.545 | -- | -- | -- | -- | -- |
| 437.53 | 0.978 | 3.66 | -- | 1.76 | -- | -- | -- | 0.397 | 9.61 | -- | -- | -- | -- |
| 558.6 | 1.1 | 3.78 | -- | -- | -1.52 | -- | -- | 0.112 | -- | 20.15 | 4519 | -- | -- |
| 621.04 | 1.16 | 3.7 | -- | -- | -- | -- | -- | 0.403 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 338.86 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 3 |
| 3 | 339.46 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 14 | 342.17 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 10 |
| 19 | 342.56 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 22 | 9 |
| 21 | 342.63 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 12 |
| 24 | 342.82 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 3 |
| 37 | 343.68 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 4 | 2 |
| 50 | 344.72 | temperature | 20.0 | 720 | < th | dose independent | rect. | 5 | 1 |
| 71 | 345.79 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 78 | 346.08 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 87 | 346.54 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 1 | 7 |
| 99 | 346.78 | wind | 3.0 | 10 | < th | dose dependent | rect. | 5 | 2 |
| 117 | 347.12 | wind | 3.0 | 30 | < th | dose dependent | rect. | 5 | 13 |
| 124 | 347.28 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 137 | 347.40 | temperature | 20.0 | 720 | > th | dose independent | sin | 10 | NA |
| 153 | 347.93 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 10 |
| 154 | 347.96 | wind | 3.0 | 30 | < th | dose dependent | rect. | 5 | 11 |
| 175 | 348.32 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 12 |
| 183 | 348.48 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 234 | 349.43 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 235 | 349.43 | temperature | 25.0 | 720 | < th | dose dependent | sin | 7 | NA |
| 240 | 349.49 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 243 | 349.55 | temperature | 20.0 | 720 | < th | dose independent | sin | 7 | NA |
| 276 | 349.98 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 6 |
| 281 | 350.00 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 6 |
| 283 | 350.00 | temperature | 10.0 | 720 | > th | dose dependent | sin | 9 | NA |
| 291 | 350.06 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 9 |
| 304 | 350.16 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 1 | 6 |
| 314 | 350.20 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 9 |
| 354 | 350.38 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 1 | 6 |
| 368 | 350.44 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 13 | 5 |
| 383 | 350.48 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 19 |
| 425 | 350.63 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 433 | 350.67 | temperature | 20.0 | 4320 | < th | dose independent | sin | 10 | NA |
| 461 | 350.81 | temperature | 20.0 | 4320 | > th | dose independent | sin | 10 | NA |
| 464 | 350.81 | wind | 3.0 | 30 | < th | dose dependent | rect. | 5 | 18 |
| 532 | 351.10 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 574 | 351.26 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 608 | 351.38 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 617 | 351.41 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 742 | 351.71 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 13 | 5 |
| 812 | 351.87 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 816 | 351.87 | radiation | 20.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 847 | 351.96 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 18 |
| 867 | 352.01 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 869 | 352.02 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 13 | 18 |
| 890 | 352.04 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 916 | 352.09 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 13 | 3 |
| 946 | 352.14 | radiation | 40.0 | 43200 | > th | dose independent | sin | 15 | NA |
| 967 | 352.19 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 972 | 352.20 | radiation | 10.0 | 43200 | > th | dose dependent | rect. | 13 | 3 |
| 1000 | 352.27 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 13 | 1 |