Os09g0110200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os09g0110200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.6 | 0.324 | 9.28 | 1.2 | 0.512 | -0.764 | 0.508 | 3.06 | 0.171 | 16.5 | 10.25 | 1068 | -- | -- |
| 55.56 | 0.347 | 9.34 | 0.751 | 0.548 | -0.701 | 0.168 | -- | 0.09 | 16.1 | 7.847 | 8367 | -- | -- |
| 48.24 | 0.323 | 9.29 | 1.17 | 0.531 | -0.767 | -- | 2.94 | 0.162 | 16.6 | 10.54 | 991 | -- | -- |
| 55.56 | 0.347 | 9.34 | 0.74 | 0.534 | -0.695 | -- | -- | 0.0885 | 15.9 | 9.072 | 8438 | -- | -- |
| 61.83 | 0.366 | 9.28 | 1.19 | -- | -0.89 | -- | 2.81 | 0.175 | -- | 10.87 | 1151 | -- | -- |
| 63.43 | 0.373 | 9.39 | 0.369 | 0.563 | -- | 0.145 | -- | -0.117 | 15.8 | -- | -- | -- | -- |
| 63.49 | 0.373 | 9.39 | 0.371 | 0.563 | -- | -- | -- | -0.116 | 15.8 | -- | -- | -- | -- |
| 71.1 | 0.393 | 9.34 | 0.752 | -- | -0.767 | -- | -- | 0.0915 | -- | 10.36 | 8379 | -- | -- |
| 63.67 | 0.372 | 9.38 | -- | 0.504 | -0.322 | -- | -- | -0.0899 | 16 | 21.3 | 1182 | -- | -- |
| 81 | 0.421 | 9.39 | 0.348 | -- | -- | -- | -- | -0.131 | -- | -- | -- | -- | -- |
| 67.12 | 0.383 | 9.4 | -- | 0.556 | -- | -- | -- | -0.158 | 15.8 | -- | -- | -- | -- |
| 77.52 | 0.41 | 9.38 | -- | -- | -0.428 | -- | -- | -0.0957 | -- | 22.2 | 1185 | -- | -- |
| 84.19 | 0.428 | 9.39 | -- | -- | -- | -- | -- | -0.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.14 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 5 | 47.17 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 87 | 47.64 | temperature | 10 | 1440 | > th | dose dependent | sin | 21 | NA |
| 123 | 47.75 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 201 | 47.95 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 285 | 48.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 22 |
| 297 | 48.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 342 | 48.20 | radiation | 20 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 371 | 48.26 | temperature | 30 | 1440 | < th | dose dependent | sin | 21 | NA |
| 385 | 48.27 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 529 | 48.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 22 |
| 530 | 48.50 | radiation | 20 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 546 | 48.52 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 556 | 48.53 | temperature | 15 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 633 | 48.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 698 | 48.70 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 704 | 48.72 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 932 | 48.95 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 942 | 48.96 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 23 |