Os09g0109600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0109600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 242.32 | 0.731 | 6.46 | 1.29 | 0.431 | 1.73 | 0.567 | 0.19 | -0.279 | 11.6 | 25.87 | 1366 | -- | -- |
| 242.36 | 0.725 | 6.46 | 1.26 | 0.422 | 1.73 | 0.529 | -- | -0.28 | 11.6 | 25.9 | 1365 | -- | -- |
| 243.68 | 0.727 | 6.46 | 1.29 | 0.424 | 1.73 | -- | 0.0948 | -0.275 | 11.5 | 25.9 | 1372 | -- | -- |
| 243.68 | 0.727 | 6.46 | 1.27 | 0.423 | 1.73 | -- | -- | -0.282 | 11.6 | 25.9 | 1372 | -- | -- |
| 253.46 | 0.741 | 6.47 | 1.31 | -- | 1.63 | -- | 0.171 | -0.269 | -- | 25.96 | 1440 | -- | -- |
| 376.4 | 0.91 | 6.44 | 1.85 | 0.29 | -- | 0.412 | -- | -0.158 | 9.52 | -- | -- | -- | -- |
| 377.02 | 0.909 | 6.44 | 1.86 | 0.287 | -- | -- | -- | -0.158 | 9.66 | -- | -- | -- | -- |
| 253.48 | 0.742 | 6.47 | 1.27 | -- | 1.65 | -- | -- | -0.277 | -- | 25.99 | 1440 | -- | -- |
| 284.39 | 0.785 | 6.49 | -- | 0.532 | 1.97 | -- | -- | -0.35 | 11.4 | 25.7 | 1386 | -- | -- |
| 381.91 | 0.913 | 6.45 | 1.86 | -- | -- | -- | -- | -0.157 | -- | -- | -- | -- | -- |
| 468.51 | 1.01 | 6.48 | -- | 0.286 | -- | -- | -- | -0.365 | 9.17 | -- | -- | -- | -- |
| 292.65 | 0.797 | 6.5 | -- | -- | 1.87 | -- | -- | -0.447 | -- | 25.8 | 1443 | -- | -- |
| 473.23 | 1.02 | 6.49 | -- | -- | -- | -- | -- | -0.364 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 242.67 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 2 | 242.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 11 | 243.57 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 12 | 243.57 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 16 | 243.62 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 11 |
| 51 | 244.21 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 52 | 244.22 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 16 |
| 100 | 244.50 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 186 | 245.06 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 202 | 245.15 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 229 | 245.40 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 334 | 249.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 338 | 249.79 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 340 | 249.86 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 344 | 250.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 345 | 250.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 347 | 250.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 350 | 250.18 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 351 | 250.19 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 358 | 250.24 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 16 |
| 367 | 250.46 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 389 | 250.79 | temperature | 30 | 1440 | < th | dose independent | sin | 21 | NA |
| 393 | 250.85 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 13 |
| 398 | 250.88 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 16 |
| 402 | 250.89 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 19 |
| 420 | 250.93 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 17 |
| 423 | 250.94 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 10 |
| 424 | 250.94 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 427 | 250.94 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 435 | 250.95 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 16 |
| 438 | 250.95 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 441 | 250.95 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 446 | 250.96 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 19 |
| 452 | 250.96 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 23 |
| 455 | 250.97 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 529 | 251.29 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 533 | 251.38 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 544 | 251.59 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 594 | 251.85 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 639 | 252.27 | temperature | 30 | 1440 | > th | dose independent | sin | 20 | NA |
| 657 | 252.47 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 775 | 252.59 | radiation | 10 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 854 | 253.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 857 | 253.27 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 892 | 253.69 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 983 | 254.11 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 997 | 254.17 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 998 | 254.18 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |