Os09g0107900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os09g0107900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 109.79 | 0.492 | 7.1 | -0.153 | 1.15 | 0.335 | 0.132 | 2.76 | -0.173 | 19.5 | 21.4 | 1598 | -- | -- |
| 121.87 | 0.518 | 7.2 | -0.91 | 1.17 | 0.322 | 0.248 | -- | -0.373 | 19.8 | 21.4 | 1598 | -- | -- |
| 109.84 | 0.488 | 7.09 | -0.155 | 1.15 | 0.335 | -- | 2.76 | -0.172 | 19.4 | 21.4 | 1598 | -- | -- |
| 121.29 | 0.513 | 7.22 | -0.932 | 1.05 | 0.433 | -- | -- | -0.44 | 19 | 25.8 | 932 | -- | -- |
| 179.21 | 0.623 | 7.06 | 0.0558 | -- | 0.286 | -- | 2.88 | -0.146 | -- | 22.23 | 2082 | -- | -- |
| 127 | 0.528 | 7.18 | -0.812 | 1.15 | -- | 0.156 | -- | -0.292 | 19.4 | -- | -- | -- | -- |
| 127.07 | 0.528 | 7.18 | -0.815 | 1.15 | -- | -- | -- | -0.292 | 19.4 | -- | -- | -- | -- |
| 152.64 | 0.575 | 7.21 | -1.1 | -- | 0.937 | -- | -- | -0.588 | -- | 25.87 | 581 | -- | -- |
| 144.04 | 0.559 | 7.18 | -- | 0.959 | 0.286 | -- | -- | -0.324 | 19 | 25.27 | 772 | -- | -- |
| 198 | 0.658 | 7.15 | -0.834 | -- | -- | -- | -- | -0.311 | -- | -- | -- | -- | -- |
| 144.58 | 0.562 | 7.16 | -- | 1.16 | -- | -- | -- | -0.201 | 19.4 | -- | -- | -- | -- |
| 183.44 | 0.631 | 7.17 | -- | -- | 0.775 | -- | -- | -0.422 | -- | 25.89 | 565 | -- | -- |
| 216.34 | 0.687 | 7.13 | -- | -- | -- | -- | -- | -0.218 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 109.98 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 3 | 110.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 1 |
| 5 | 110.60 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 8 | 110.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 8 |
| 9 | 110.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 10 |
| 11 | 110.77 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 13 | 110.78 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 14 | 110.78 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 18 | 110.81 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 19 | 110.82 | temperature | 20 | 270 | > th | dose dependent | sin | 11 | NA |
| 30 | 110.98 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 50 | 111.19 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 54 | 111.21 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 84 | 111.49 | temperature | 15 | 90 | > th | dose dependent | sin | 8 | NA |
| 87 | 111.50 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 92 | 111.54 | humidity | 80 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 101 | 111.57 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 105 | 111.58 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 18 |
| 120 | 111.64 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 132 | 111.69 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 137 | 111.69 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 149 | 111.73 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 257 | 112.08 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 297 | 112.17 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 8 |
| 311 | 112.22 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 359 | 112.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 376 | 112.36 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 9 |
| 389 | 112.41 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 2 |
| 421 | 112.47 | wind | 7 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 458 | 112.55 | humidity | 80 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 485 | 112.60 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 501 | 112.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 539 | 112.72 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 13 |
| 552 | 112.74 | temperature | 25 | 4320 | < th | dose dependent | sin | 15 | NA |
| 571 | 112.78 | wind | 5 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 592 | 112.80 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 18 |
| 593 | 112.81 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 676 | 112.94 | temperature | 20 | 270 | > th | dose independent | sin | 9 | NA |
| 683 | 112.94 | temperature | 25 | 270 | < th | dose dependent | rect. | 9 | 21 |
| 696 | 112.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 18 |
| 754 | 113.04 | temperature | 20 | 30 | > th | dose independent | sin | 7 | NA |
| 761 | 113.05 | wind | 7 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 777 | 113.08 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 884 | 113.19 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 14 |
| 888 | 113.20 | wind | 3 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 899 | 113.21 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 913 | 113.24 | wind | 7 | 4320 | < th | dose independent | rect. | 21 | 5 |
| 929 | 113.28 | humidity | 80 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 930 | 113.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 942 | 113.29 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 3 |