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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0107600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.83 (0.0137) R2 : 0.000772
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0171 (0.0288) R2dN8 : 0.000997 R2N8 : 0.000772
σ : 0.258
deviance : 30.54
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
29.29 0.254 2.82 0.107 0.104 0.136 0.027 -1.1 0.0346 11.8 29.66 15 -- --
29.84 0.254 2.83 0.00339 0.0934 0.0988 0.122 -- 0.011 12.4 30.5 47 -- --
29.25 0.254 2.82 0.0987 0.108 0.0969 -- -0.963 0.043 11.6 29.67 14 -- --
29.75 0.256 2.83 0.000916 0.105 0.0962 -- -- 0.016 12.2 30.03 35 -- --
29.9 0.255 2.82 0.0942 -- 0.0974 -- -1.06 0.0325 -- 29.62 15 -- --
30.04 0.257 2.83 -0.0128 0.0865 -- 0.0919 -- 0.0164 11.5 -- -- -- --
30.08 0.257 2.83 -0.00918 0.0862 -- -- -- 0.0167 11.4 -- -- -- --
30.4 0.258 2.83 -0.0058 -- 0.0606 -- -- 0.0149 -- 30.03 35 -- --
29.75 0.255 2.83 -- 0.105 0.0961 -- -- 0.0159 12.2 30.1 37 -- --
30.54 0.258 2.83 -0.0114 -- -- -- -- 0.0159 -- -- -- -- --
30.08 0.257 2.83 -- 0.0863 -- -- -- 0.0177 11.4 -- -- -- --
30.4 0.258 2.83 -- -- 0.0609 -- -- 0.0156 -- 30.03 35 -- --
30.54 0.258 2.83 -- -- -- -- -- 0.0171 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.48 wind 7.0 1440 < th dose independent rect. 5 1
3 27.48 temperature 25.0 10 > th dose independent rect. 4 1
6 27.48 temperature 10.0 1440 > th dose independent rect. 5 1
9 27.48 temperature 30.0 1440 < th dose independent rect. 5 1
13 27.48 humidity 50.0 1440 > th dose independent rect. 5 1
22 27.48 atmosphere 995.0 1440 > th dose independent rect. 5 1
23 27.48 atmosphere 1015.0 1440 < th dose independent rect. 5 1
24 27.48 radiation 20.0 1440 < th dose independent rect. 5 1
33 27.48 temperature 10.0 1440 > th dose independent rect. 6 23
36 27.48 temperature 25.0 90 > th dose dependent rect. 4 1
37 27.48 atmosphere 1005.0 30 > th dose dependent rect. 4 1
38 27.49 atmosphere 1005.0 30 > th dose independent rect. 4 1
39 27.49 temperature 25.0 10 > th dose dependent rect. 4 1
40 27.49 temperature 15.0 30 > th dose dependent rect. 4 1
44 27.50 wind 3.0 30 < th dose independent rect. 4 1
48 27.50 temperature 10.0 30 > th dose independent rect. 4 1
51 27.50 temperature 30.0 30 < th dose independent rect. 4 1
52 27.50 humidity 50.0 30 > th dose independent rect. 4 1
55 27.50 humidity 90.0 10 < th dose independent rect. 4 1
57 27.50 atmosphere 995.0 30 > th dose independent rect. 4 1
59 27.50 atmosphere 1010.0 30 < th dose independent rect. 4 1
61 27.50 radiation 1.0 30 < th dose independent rect. 4 1
67 27.50 temperature 10.0 30 > th dose independent rect. 5 23
68 27.50 wind 5.0 30 < th dose dependent rect. 4 1
73 27.50 radiation 10.0 30 < th dose dependent rect. 4 1
77 27.51 wind 1.0 30 > th dose independent rect. 4 1
80 27.51 precipitation 0.1 30 < th dose independent rect. 4 1
86 27.51 humidity 50.0 30 > th dose dependent rect. 4 1
90 27.51 precipitation 0.1 30 < th dose dependent rect. 4 1
100 27.53 atmosphere 1015.0 30 < th dose dependent rect. 4 1
106 27.55 temperature 30.0 30 < th dose dependent rect. 4 1
108 27.56 atmosphere 995.0 30 > th dose independent rect. 5 23
116 27.59 wind 1.0 30 > th dose dependent rect. 4 1
155 27.67 humidity 90.0 90 < th dose dependent rect. 4 1
165 27.71 precipitation 0.1 30 < th dose independent rect. 5 23
166 27.71 precipitation 0.1 30 < th dose dependent rect. 5 23
174 27.83 humidity 90.0 10 < th dose dependent rect. 4 1
185 28.08 wind 9.0 30 < th dose independent rect. 5 23
199 28.47 humidity 50.0 30 > th dose independent rect. 5 23
217 28.63 precipitation 0.1 4320 > th dose independent rect. 23 1
218 28.63 precipitation 0.1 4320 > th dose dependent rect. 23 1
219 28.65 radiation 1.0 90 < th dose independent rect. 14 1
220 28.65 radiation 1.0 90 < th dose dependent rect. 14 1
221 28.68 precipitation 0.1 4320 < th dose independent rect. 23 1
223 28.68 precipitation 0.1 4320 < th dose dependent rect. 23 1
224 28.68 temperature 20.0 90 < th dose dependent rect. 12 4
226 28.69 temperature 20.0 10 < th dose dependent rect. 12 4
228 28.69 radiation 1.0 10 < th dose dependent rect. 4 13
229 28.71 atmosphere 1005.0 90 > th dose dependent rect. 14 1
241 28.76 radiation 1.0 10 < th dose independent rect. 4 13
242 28.76 wind 1.0 30 > th dose independent rect. 5 23
243 28.79 temperature 25.0 90 < th dose dependent rect. 14 1
259 28.84 temperature 20.0 90 < th dose independent rect. 12 4
260 28.84 humidity 60.0 90 > th dose independent rect. 5 8
263 28.85 precipitation 0.1 4320 > th dose independent rect. 23 4
268 28.86 precipitation 0.1 4320 < th dose independent rect. 23 4
272 28.86 precipitation 0.1 4320 < th dose dependent rect. 23 4
280 28.88 precipitation 0.1 4320 > th dose dependent rect. 23 4
282 28.89 atmosphere 1005.0 30 > th dose independent rect. 14 2
312 28.93 wind 7.0 30 < th dose independent rect. 14 15
329 28.98 humidity 60.0 90 > th dose independent rect. 9 4
331 28.98 temperature 30.0 30 < th dose independent rect. 14 15
332 28.98 radiation 1.0 10 > th dose independent rect. 16 22
341 29.00 humidity 60.0 30 > th dose independent rect. 14 15
350 29.02 wind 1.0 10 > th dose independent rect. 5 9
357 29.02 radiation 40.0 30 < th dose dependent rect. 9 4
363 29.04 radiation 40.0 90 < th dose independent rect. 9 4
374 29.05 radiation 40.0 30 < th dose independent rect. 14 15
378 29.06 temperature 20.0 90 < th dose independent rect. 14 2
379 29.06 radiation 30.0 10 < th dose independent rect. 9 4
395 29.07 radiation 40.0 270 < th dose independent rect. 7 5
400 29.07 humidity 60.0 30 > th dose independent rect. 16 22
414 29.08 radiation 40.0 270 < th dose independent rect. 9 1
415 29.08 precipitation 0.1 4320 > th dose independent rect. 2 1
416 29.08 precipitation 0.1 4320 < th dose independent rect. 2 1
422 29.08 radiation 1.0 10 < th dose independent rect. 4 4
430 29.08 radiation 40.0 30 < th dose dependent rect. 11 1
431 29.08 precipitation 0.1 4320 > th dose dependent rect. 2 1
432 29.08 precipitation 0.1 4320 < th dose dependent rect. 2 1
456 29.09 humidity 60.0 10 > th dose independent rect. 8 6
459 29.09 temperature 30.0 30 < th dose independent rect. 5 23
462 29.09 atmosphere 995.0 30 > th dose dependent rect. 14 15
469 29.10 precipitation 0.1 30 < th dose independent rect. 14 15
478 29.10 precipitation 0.1 30 < th dose dependent rect. 14 15
479 29.11 wind 3.0 90 > th dose independent rect. 14 1
487 29.11 temperature 10.0 30 > th dose independent rect. 5 9
489 29.11 atmosphere 995.0 30 > th dose independent rect. 5 9
490 29.11 atmosphere 1015.0 30 < th dose independent rect. 5 9
492 29.11 precipitation 0.1 30 < th dose independent rect. 5 9
493 29.11 temperature 10.0 30 > th dose independent rect. 14 15
494 29.11 atmosphere 995.0 30 > th dose independent rect. 14 15
500 29.11 precipitation 0.1 30 < th dose dependent rect. 5 9
508 29.12 temperature 30.0 10 < th dose independent rect. 4 12
512 29.12 radiation 40.0 270 < th dose dependent rect. 7 5
527 29.13 temperature 10.0 1440 > th dose independent rect. 6 9
530 29.13 temperature 10.0 1440 > th dose independent rect. 15 15
534 29.13 atmosphere 1015.0 30 < th dose independent rect. 5 23
543 29.14 humidity 70.0 270 > th dose independent rect. 9 1
557 29.14 radiation 40.0 270 < th dose independent rect. 5 7
558 29.14 wind 9.0 30 < th dose independent rect. 5 9
561 29.14 precipitation 0.1 14400 > th dose dependent rect. 20 13
562 29.14 temperature 10.0 30 > th dose dependent rect. 5 23
576 29.15 atmosphere 1005.0 30 > th dose independent rect. 4 12
577 29.15 precipitation 0.1 14400 < th dose independent rect. 20 13
587 29.15 precipitation 0.1 14400 > th dose dependent rect. 20 11
589 29.15 precipitation 0.1 14400 < th dose dependent rect. 20 13
593 29.16 atmosphere 1005.0 90 < th dose independent rect. 10 1
605 29.16 precipitation 0.1 14400 > th dose independent rect. 20 13
610 29.16 precipitation 0.1 14400 > th dose independent rect. 20 16
626 29.17 humidity 60.0 90 > th dose independent rect. 14 1
646 29.17 precipitation 0.1 14400 > th dose independent rect. 20 11
647 29.17 precipitation 0.1 14400 < th dose independent rect. 20 11
650 29.17 wind 1.0 30 > th dose independent rect. 14 15
659 29.17 humidity 50.0 90 > th dose dependent rect. 14 1
665 29.17 precipitation 0.1 14400 > th dose dependent rect. 20 8
668 29.17 precipitation 0.1 14400 < th dose dependent rect. 20 11
722 29.19 wind 1.0 90 < th dose dependent rect. 9 3
728 29.20 wind 1.0 720 > th dose independent rect. 4 1
742 29.20 radiation 40.0 90 > th dose independent rect. 14 19
747 29.20 temperature 10.0 30 > th dose dependent rect. 5 9
748 29.21 wind 7.0 90 < th dose independent rect. 14 1
778 29.22 radiation 20.0 720 < th dose independent rect. 17 8
787 29.22 radiation 10.0 10 < th dose dependent rect. 12 1
814 29.23 temperature 10.0 720 > th dose independent rect. 17 8
816 29.23 atmosphere 995.0 720 > th dose independent rect. 5 8
817 29.23 atmosphere 1015.0 720 < th dose independent rect. 5 8
822 29.23 temperature 10.0 720 > th dose independent rect. 1 16
823 29.23 temperature 10.0 720 > th dose independent rect. 13 16
828 29.23 radiation 30.0 10 < th dose independent rect. 5 23
843 29.24 humidity 50.0 720 > th dose independent rect. 5 8
868 29.25 radiation 1.0 10 > th dose independent rect. 5 9
887 29.25 atmosphere 995.0 720 > th dose independent rect. 13 16
899 29.25 humidity 50.0 10 > th dose dependent rect. 14 2
910 29.25 radiation 40.0 30 < th dose dependent rect. 5 23
913 29.26 atmosphere 1005.0 720 > th dose independent rect. 4 1
922 29.26 atmosphere 995.0 720 > th dose independent rect. 17 8
923 29.26 precipitation 0.1 720 < th dose independent rect. 17 8
933 29.26 radiation 30.0 10 > th dose independent rect. 14 20
948 29.26 precipitation 0.1 720 < th dose dependent rect. 17 8
965 29.27 radiation 10.0 720 < th dose independent rect. 23 8
977 29.27 atmosphere 995.0 720 > th dose independent rect. 1 16
983 29.27 atmosphere 995.0 720 > th dose dependent rect. 4 1