Os09g0106200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ps16 protein.
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Os09g0106200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ps16 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.3 | 0.279 | 10.6 | 0.64 | 0.29 | 1.36 | 0.477 | -1.73 | -0.0435 | 19.5 | 60.96 | 1086 | -- | -- |
| 37.9 | 0.287 | 10.6 | 0.333 | 0.246 | 1.34 | 0.56 | -- | -0.166 | 19.9 | 85.86 | 1147 | -- | -- |
| 35.85 | 0.279 | 10.6 | 0.647 | 0.3 | 1.35 | -- | -1.84 | -0.0393 | 19.1 | 74.13 | 1067 | -- | -- |
| 38.63 | 0.289 | 10.6 | 0.26 | 0.26 | 1.31 | -- | -- | -0.139 | 18.8 | 239.7 | 1173 | -- | -- |
| 39.21 | 0.292 | 10.6 | 0.625 | -- | 1.32 | -- | -1.65 | -0.0448 | -- | 73.62 | 1231 | -- | -- |
| 65.03 | 0.378 | 10.7 | -0.113 | 0.307 | -- | -0.235 | -- | -0.363 | 16.2 | -- | -- | -- | -- |
| 65.14 | 0.378 | 10.7 | -0.116 | 0.31 | -- | -- | -- | -0.365 | 16.6 | -- | -- | -- | -- |
| 41.45 | 0.3 | 10.6 | 0.274 | -- | 1.3 | -- | -- | -0.137 | -- | 289.9 | 1268 | -- | -- |
| 40.27 | 0.296 | 10.6 | -- | 0.25 | 1.18 | -- | -- | -0.185 | 18.5 | 245.4 | 1172 | -- | -- |
| 70.25 | 0.392 | 10.7 | -0.128 | -- | -- | -- | -- | -0.373 | -- | -- | -- | -- | -- |
| 65.49 | 0.379 | 10.7 | -- | 0.312 | -- | -- | -- | -0.352 | 16.6 | -- | -- | -- | -- |
| 43.17 | 0.306 | 10.6 | -- | -- | 1.19 | -- | -- | -0.185 | -- | 264.6 | 1263 | -- | -- |
| 70.68 | 0.392 | 10.7 | -- | -- | -- | -- | -- | -0.359 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.00 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 21 |
| 14 | 35.61 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 18 |
| 22 | 35.85 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 20 |
| 70 | 36.67 | temperature | 15 | 720 | > th | dose dependent | sin | 14 | NA |
| 76 | 36.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 77 | 36.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 23 |
| 81 | 36.79 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 95 | 36.88 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 99 | 36.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 106 | 36.98 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 109 | 36.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 110 | 37.00 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 122 | 37.05 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 124 | 37.05 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 142 | 37.17 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 173 | 37.34 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 19 |
| 375 | 37.53 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 23 |
| 413 | 37.58 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 12 |
| 694 | 37.86 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 699 | 37.87 | temperature | 30 | 720 | < th | dose dependent | sin | 13 | NA |
| 743 | 37.93 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 895 | 38.12 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 19 |