Os09g0104300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1168 family protein.
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Os09g0104300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1168 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.61 | 0.167 | 11.2 | 0.144 | 0.0514 | -0.265 | -0.377 | -1.02 | -0.0404 | 1.37 | 1003 | 6015 | -- | -- |
| 13.52 | 0.171 | 11.2 | 0.107 | 0.05 | -0.327 | -0.337 | -- | -0.0213 | 1.36 | 1003 | 6026 | -- | -- |
| 13.13 | 0.169 | 11.2 | 0.158 | 0.059 | -0.261 | -- | -1.02 | -0.0357 | 23.2 | 1003 | 6063 | -- | -- |
| 14 | 0.174 | 11.2 | 0.115 | 0.0634 | -0.335 | -- | -- | -0.0311 | 23.2 | 1003 | 6014 | -- | -- |
| 13.35 | 0.17 | 11.2 | 0.161 | -- | -0.257 | -- | -1.03 | -0.0359 | -- | 1003 | 6079 | -- | -- |
| 15.33 | 0.184 | 11.2 | 0.134 | 0.0527 | -- | -0.353 | -- | -0.0774 | 1.2 | -- | -- | -- | -- |
| 15.77 | 0.186 | 11.2 | 0.147 | 0.0634 | -- | -- | -- | -0.0748 | 22.8 | -- | -- | -- | -- |
| 14.25 | 0.176 | 11.2 | 0.119 | -- | -0.334 | -- | -- | -0.0295 | -- | 1003 | 6057 | -- | -- |
| 14.36 | 0.177 | 11.2 | -- | 0.0646 | -0.352 | -- | -- | -0.0406 | 23.3 | 1003 | 6059 | -- | -- |
| 16.02 | 0.187 | 11.2 | 0.149 | -- | -- | -- | -- | -0.0744 | -- | -- | -- | -- | -- |
| 16.34 | 0.189 | 11.2 | -- | 0.0646 | -- | -- | -- | -0.0912 | 22.9 | -- | -- | -- | -- |
| 14.62 | 0.178 | 11.2 | -- | -- | -0.351 | -- | -- | -0.0401 | -- | 1003 | 6069 | -- | -- |
| 16.6 | 0.19 | 11.2 | -- | -- | -- | -- | -- | -0.0909 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.85 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 33 | 12.97 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 53 | 12.99 | atmosphere | 1005 | 4320 | < th | dose dependent | sin | 7 | NA |
| 54 | 12.99 | atmosphere | 1005 | 4320 | < th | dose dependent | sin | 4 | NA |
| 126 | 13.02 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 213 | 13.04 | atmosphere | 1005 | 4320 | < th | dose dependent | no | NA | NA |
| 450 | 13.10 | atmosphere | 1005 | 4320 | < th | dose dependent | sin | 19 | NA |
| 599 | 13.12 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 602 | 13.12 | atmosphere | 1000 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 613 | 13.12 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 14 | 19 |
| 615 | 13.12 | atmosphere | 1000 | 4320 | < th | dose independent | rect. | 15 | 19 |
| 627 | 13.12 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 19 | 3 |
| 699 | 13.13 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 6 | 12 |
| 702 | 13.13 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 21 | 13 |
| 703 | 13.13 | atmosphere | 1000 | 4320 | < th | dose independent | rect. | 21 | 13 |
| 707 | 13.13 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 2 | 16 |
| 710 | 13.13 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 5 | 17 |
| 712 | 13.13 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 17 | 17 |
| 732 | 13.13 | atmosphere | 1000 | 4320 | < th | dose independent | rect. | 23 | 19 |
| 737 | 13.13 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 21 | 20 |
| 742 | 13.13 | atmosphere | 1000 | 4320 | < th | dose independent | rect. | 21 | 20 |
| 759 | 13.13 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 24 | 22 |
| 776 | 13.13 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 837 | 13.14 | atmosphere | 1000 | 4320 | > th | dose independent | no | NA | NA |
| 838 | 13.14 | atmosphere | 1000 | 4320 | < th | dose independent | no | NA | NA |
| 851 | 13.14 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 8 | 10 |
| 855 | 13.14 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 23 | 11 |
| 856 | 13.14 | atmosphere | 1000 | 4320 | < th | dose independent | rect. | 7 | 11 |
| 908 | 13.14 | atmosphere | 1000 | 4320 | < th | dose independent | rect. | 5 | 17 |
| 921 | 13.14 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 21 | 18 |
| 956 | 13.14 | atmosphere | 1000 | 4320 | < th | dose independent | rect. | 2 | 20 |