Os09g0104200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RecA bacterial DNA recombination family protein.
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Os09g0104200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RecA bacterial DNA recombination family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.28 | 0.309 | 7.37 | -1.83 | 1.01 | -0.891 | 0.104 | -1.28 | -0.35 | 4.89 | 26.69 | 22 | -- | -- |
| 45.67 | 0.317 | 7.39 | -2.03 | 0.998 | -0.811 | -0.267 | -- | -0.392 | 4.91 | 27.16 | 14 | -- | -- |
| 43.23 | 0.309 | 7.37 | -1.82 | 1 | -0.876 | -- | -1.24 | -0.348 | 4.88 | 26.69 | 22 | -- | -- |
| 45.78 | 0.315 | 7.39 | -2.03 | 1 | -0.826 | -- | -- | -0.396 | 4.91 | 27.21 | 14 | -- | -- |
| 86.3 | 0.435 | 7.36 | -1.78 | -- | -0.614 | -- | -1.07 | -0.246 | -- | 24 | 34 | -- | -- |
| 55.27 | 0.349 | 7.35 | -1.83 | 0.845 | -- | -0.351 | -- | -0.215 | 5.66 | -- | -- | -- | -- |
| 55.58 | 0.349 | 7.35 | -1.83 | 0.843 | -- | -- | -- | -0.214 | 5.67 | -- | -- | -- | -- |
| 88.27 | 0.439 | 7.38 | -1.92 | -- | -0.515 | -- | -- | -0.275 | -- | 24 | 34 | -- | -- |
| 144.09 | 0.559 | 7.3 | -- | 0.805 | 0.0581 | -- | -- | -0.0026 | 5.83 | 41.72 | 3 | -- | -- |
| 92.5 | 0.449 | 7.36 | -1.81 | -- | -- | -- | -- | -0.194 | -- | -- | -- | -- | -- |
| 144.13 | 0.562 | 7.3 | -- | 0.814 | -- | -- | -- | -0.00953 | 5.77 | -- | -- | -- | -- |
| 167.43 | 0.603 | 7.29 | -- | -- | 0.831 | -- | -- | 0.102 | -- | 90.62 | 327 | -- | -- |
| 178.55 | 0.624 | 7.32 | -- | -- | -- | -- | -- | 0.00685 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.21 | temperature | 25 | 30 | < th | dose dependent | rect. | 8 | 22 |
| 18 | 43.70 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 20 | 43.72 | temperature | 25 | 30 | < th | dose dependent | no | NA | NA |
| 21 | 43.72 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 23 | 43.73 | temperature | 25 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 24 | 43.73 | temperature | 25 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 26 | 43.74 | temperature | 25 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 27 | 43.74 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 28 | 43.74 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 29 | 43.75 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 34 | 43.82 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 36 | 43.83 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 88 | 44.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 101 | 44.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 4 |
| 119 | 44.56 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 120 | 44.57 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 124 | 44.58 | humidity | 80 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 143 | 44.67 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 147 | 44.70 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 164 | 44.77 | wind | 9 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 239 | 45.18 | humidity | 80 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 243 | 45.19 | humidity | 80 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 262 | 45.26 | wind | 9 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 266 | 45.27 | humidity | 80 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 268 | 45.27 | wind | 9 | 14400 | < th | dose independent | rect. | 4 | 10 |
| 272 | 45.28 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 8 |
| 273 | 45.28 | wind | 9 | 14400 | < th | dose independent | rect. | 1 | 13 |
| 322 | 45.37 | wind | 9 | 14400 | > th | dose independent | rect. | 4 | 10 |
| 327 | 45.38 | humidity | 80 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 339 | 45.40 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 352 | 45.42 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 383 | 45.47 | humidity | 90 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 437 | 45.54 | humidity | 80 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 480 | 45.59 | temperature | 25 | 10 | < th | dose dependent | sin | 16 | NA |
| 545 | 45.67 | humidity | 80 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 631 | 45.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 646 | 45.80 | wind | 9 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 684 | 45.82 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 816 | 45.96 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 819 | 45.96 | wind | 9 | 14400 | > th | dose dependent | rect. | 4 | 10 |
| 847 | 45.98 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 889 | 46.02 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 898 | 46.02 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |