Os08g0564700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os08g0564700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 124.43 | 0.524 | 7.45 | 1.58 | 0.268 | -2.24 | -1.84 | 2.75 | 0.457 | 16.4 | 19.95 | 412 | 23 | -- |
| 127.52 | 0.526 | 7.51 | 1.09 | 0.464 | -2.17 | -1.24 | -- | 0.29 | 17.3 | 18.64 | 468 | 22.7 | -- |
| 130.23 | 0.532 | 7.5 | 1.35 | 0.507 | -2.03 | -- | 1.28 | 0.362 | 19.1 | 20.34 | 468 | 22.9 | -- |
| 130.91 | 0.533 | 7.52 | 1.14 | 0.501 | -2.18 | -- | -- | 0.28 | 17.3 | 18.5 | 469 | 22.5 | -- |
| 133.19 | 0.538 | 7.46 | 1.44 | -- | -2.05 | -- | 1.53 | 0.423 | -- | 19.35 | 467 | 23.9 | -- |
| 187.43 | 0.642 | 7.59 | 0.771 | 0.926 | -- | 0.614 | -- | -0.00404 | 23.6 | -- | -- | -- | -- |
| 188.95 | 0.644 | 7.59 | 0.748 | 0.925 | -- | -- | -- | -0.00544 | 23.4 | -- | -- | -- | -- |
| 134.3 | 0.54 | 7.52 | 1.13 | -- | -1.94 | -- | -- | 0.278 | -- | 17.1 | 515 | 23.8 | -- |
| 163.09 | 0.595 | 7.56 | -- | 0.577 | -1.77 | -- | -- | 0.105 | 19.3 | 20 | 393 | 21.6 | -- |
| 242.64 | 0.728 | 7.57 | 0.772 | -- | -- | -- | -- | 0.00412 | -- | -- | -- | -- | -- |
| 203.68 | 0.668 | 7.61 | -- | 0.933 | -- | -- | -- | -0.0887 | 23.5 | -- | -- | -- | -- |
| 166.84 | 0.602 | 7.54 | -- | -- | -1.77 | -- | -- | 0.129 | -- | 17.4 | 401 | 23 | -- |
| 258.37 | 0.75 | 7.59 | -- | -- | -- | -- | -- | -0.0815 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.38 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 11 |
| 2 | 126.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 10 | 127.80 | temperature | 20 | 270 | > th | dose dependent | sin | 3 | NA |
| 29 | 129.92 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 65 | 132.23 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 7 |
| 69 | 132.43 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 13 |
| 119 | 134.08 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 12 |
| 142 | 134.80 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 332 | 138.65 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 3 |
| 358 | 139.03 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 508 | 141.17 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 735 | 143.61 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 13 |
| 848 | 144.37 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 1 |