Os08g0564300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : ABC transporter, transmembrane region domain containing protein.
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Os08g0564300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : ABC transporter, transmembrane region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 128.82 | 0.533 | 10.5 | 0.13 | 1.83 | -0.947 | 1.1 | 0.489 | -0.9 | 8.57 | 21.3 | 1055 | -- | -- |
| 129.36 | 0.53 | 10.6 | 0.0167 | 1.85 | -0.994 | 1.02 | -- | -0.913 | 8.58 | 21.39 | 1099 | -- | -- |
| 132.52 | 0.536 | 10.5 | 0.114 | 1.86 | -0.976 | -- | 0.255 | -0.913 | 8.59 | 21.3 | 1100 | -- | -- |
| 132.62 | 0.536 | 10.6 | 0.0451 | 1.84 | -0.983 | -- | -- | -0.925 | 8.6 | 21.37 | 1096 | -- | -- |
| 305.34 | 0.814 | 10.6 | 0.212 | -- | -1.22 | -- | 0.347 | -0.913 | -- | 21.3 | 808 | -- | -- |
| 159.83 | 0.593 | 10.6 | -0.375 | 1.92 | -- | 0.939 | -- | -1.2 | 8.76 | -- | -- | -- | -- |
| 162.75 | 0.597 | 10.6 | -0.344 | 1.92 | -- | -- | -- | -1.2 | 8.79 | -- | -- | -- | -- |
| 301.8 | 0.809 | 10.6 | 0.129 | -- | -1.3 | -- | -- | -0.782 | -- | 21.8 | 796 | -- | -- |
| 132.67 | 0.536 | 10.6 | -- | 1.84 | -0.97 | -- | -- | -0.933 | 8.6 | 21.33 | 1095 | -- | -- |
| 371.61 | 0.901 | 10.7 | -0.341 | -- | -- | -- | -- | -1.18 | -- | -- | -- | -- | -- |
| 165.86 | 0.602 | 10.6 | -- | 1.92 | -- | -- | -- | -1.16 | 8.8 | -- | -- | -- | -- |
| 277.96 | 0.776 | 10.6 | -- | -- | -1.36 | -- | -- | -0.677 | -- | 25.3 | 594 | -- | -- |
| 374.68 | 0.903 | 10.7 | -- | -- | -- | -- | -- | -1.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 124.71 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 16 |
| 5 | 124.89 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 12 |
| 13 | 125.44 | temperature | 25 | 720 | < th | dose dependent | sin | 4 | NA |
| 20 | 125.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 7 |
| 134 | 127.75 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 136 | 127.78 | temperature | 15 | 720 | > th | dose dependent | sin | 6 | NA |
| 158 | 128.01 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 184 | 128.35 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 205 | 128.54 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 209 | 128.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 223 | 128.74 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 236 | 128.87 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 6 |
| 237 | 128.87 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 10 |
| 279 | 129.26 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 6 |
| 294 | 129.47 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 396 | 130.27 | temperature | 20 | 270 | > th | dose dependent | sin | 2 | NA |
| 493 | 131.16 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 16 |
| 567 | 131.71 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 12 |
| 596 | 131.82 | temperature | 20 | 720 | < th | dose independent | sin | 5 | NA |
| 734 | 132.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 2 |
| 736 | 132.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 2 |
| 742 | 132.60 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 8 |
| 757 | 132.65 | temperature | 10 | 30 | > th | dose dependent | rect. | 12 | 23 |
| 784 | 132.77 | radiation | 1 | 10 | > th | dose dependent | rect. | 5 | 7 |
| 806 | 132.80 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 819 | 132.85 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 823 | 132.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 836 | 132.89 | radiation | 1 | 10 | > th | dose dependent | rect. | 16 | 20 |
| 868 | 132.98 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 893 | 133.09 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 921 | 133.21 | radiation | 1 | 10 | > th | dose dependent | rect. | 11 | 1 |