Os08g0564000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phosphate transporter 6.
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Os08g0564000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phosphate transporter 6.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 127.62 | 0.531 | 5.68 | 2.03 | 0.81 | -1.58 | 0.265 | 4.14 | 0.241 | 8.97 | 20.48 | 4068 | -- | -- |
| 140.39 | 0.552 | 5.82 | 1.1 | 0.854 | -1.52 | -0.295 | -- | 0.0983 | 9.11 | 16.19 | 7029 | -- | -- |
| 127.64 | 0.526 | 5.67 | 2.06 | 0.81 | -1.58 | -- | 4.33 | 0.25 | 9 | 21.1 | 4112 | -- | -- |
| 138.07 | 0.547 | 5.81 | 1.16 | 0.837 | -1.83 | -- | -- | 0.0912 | 9.14 | 5.087 | 6903 | -- | -- |
| 160.57 | 0.59 | 5.7 | 2.14 | -- | -1.75 | -- | 4.57 | 0.279 | -- | 21.33 | 3667 | -- | -- |
| 194.11 | 0.653 | 5.91 | 0.245 | 0.877 | -- | 0.152 | -- | -0.373 | 9.49 | -- | -- | -- | -- |
| 194.19 | 0.653 | 5.91 | 0.251 | 0.876 | -- | -- | -- | -0.373 | 9.52 | -- | -- | -- | -- |
| 174.25 | 0.615 | 5.85 | 1.16 | -- | -1.96 | -- | -- | 0.0169 | -- | 1.668 | 5097 | -- | -- |
| 153.82 | 0.578 | 5.87 | -- | 0.751 | -1.45 | -- | -- | -0.181 | 9.56 | -9.003 | 1976 | -- | -- |
| 239.38 | 0.723 | 5.93 | 0.245 | -- | -- | -- | -- | -0.37 | -- | -- | -- | -- | -- |
| 195.85 | 0.655 | 5.92 | -- | 0.876 | -- | -- | -- | -0.401 | 9.49 | -- | -- | -- | -- |
| 165.1 | 0.598 | 5.88 | -- | -- | -2.09 | -- | -- | -0.139 | -- | 13.18 | 713 | -- | -- |
| 240.96 | 0.725 | 5.94 | -- | -- | -- | -- | -- | -0.398 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 123.49 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 4 | 125.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 5 | 125.28 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 4 |
| 7 | 125.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 9 |
| 8 | 125.47 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 7 |
| 15 | 125.59 | temperature | 25 | 4320 | < th | dose independent | rect. | 12 | 14 |
| 23 | 125.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 13 |
| 46 | 125.98 | temperature | 25 | 4320 | > th | dose independent | rect. | 12 | 13 |
| 52 | 126.02 | temperature | 20 | 720 | > th | dose dependent | sin | 12 | NA |
| 98 | 126.62 | temperature | 25 | 4320 | < th | dose independent | sin | 17 | NA |
| 107 | 126.66 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 150 | 127.07 | temperature | 25 | 4320 | > th | dose independent | sin | 18 | NA |
| 220 | 127.40 | temperature | 20 | 4320 | > th | dose dependent | sin | 16 | NA |
| 370 | 128.15 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 23 |
| 446 | 128.36 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 23 |
| 484 | 128.44 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 511 | 128.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 521 | 128.52 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 10 |
| 548 | 128.57 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 23 |
| 571 | 128.62 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 23 |
| 581 | 128.63 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 602 | 128.65 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 23 |
| 610 | 128.66 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 23 |
| 629 | 128.69 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 23 |
| 636 | 128.70 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 650 | 128.73 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 662 | 128.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 13 |
| 757 | 128.89 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 23 |
| 764 | 128.90 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 23 |
| 849 | 129.08 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 879 | 129.13 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 3 |
| 891 | 129.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 895 | 129.17 | temperature | 20 | 4320 | > th | dose dependent | rect. | 8 | 2 |
| 906 | 129.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 968 | 129.32 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |