Os08g0563300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Bet1-like SNARE 1-1 (AtBET11) (Bet1/Sft1-like SNARE 14a) (AtBS14a).
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Os08g0563300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Bet1-like SNARE 1-1 (AtBET11) (Bet1/Sft1-like SNARE 14a) (AtBS14a).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.33 | 0.333 | 10.7 | 0.227 | 0.335 | -1.21 | -0.0259 | 1.58 | 0.123 | 16.1 | 24.7 | 998 | -- | -- |
| 51.93 | 0.336 | 10.6 | 0.477 | 0.34 | -1.52 | 0.0644 | -- | 0.218 | 16.2 | 23.08 | 1091 | -- | -- |
| 50.18 | 0.33 | 10.7 | 0.273 | 0.33 | -1.26 | -- | 1.43 | 0.148 | 16.2 | 23.8 | 1055 | -- | -- |
| 51.91 | 0.336 | 10.6 | 0.477 | 0.344 | -1.56 | -- | -- | 0.218 | 16.5 | 23 | 1137 | -- | -- |
| 54.76 | 0.345 | 10.7 | 0.177 | -- | -1.17 | -- | 2.14 | 0.0987 | -- | 28.9 | 486 | -- | -- |
| 80.43 | 0.42 | 10.6 | 0.899 | 0.291 | -- | 0.0237 | -- | 0.458 | 17.8 | -- | -- | -- | -- |
| 80.43 | 0.42 | 10.6 | 0.899 | 0.291 | -- | -- | -- | 0.458 | 17.8 | -- | -- | -- | -- |
| 58.02 | 0.355 | 10.6 | 0.468 | -- | -1.5 | -- | -- | 0.206 | -- | 23 | 1146 | -- | -- |
| 56.96 | 0.352 | 10.7 | -- | 0.349 | -1.73 | -- | -- | 0.13 | 16.6 | 22.83 | 1175 | -- | -- |
| 84.83 | 0.43 | 10.6 | 0.89 | -- | -- | -- | -- | 0.451 | -- | -- | -- | -- | -- |
| 101.72 | 0.472 | 10.6 | -- | 0.278 | -- | -- | -- | 0.358 | 18 | -- | -- | -- | -- |
| 60.43 | 0.362 | 10.6 | -- | -- | -1.66 | -- | -- | 0.146 | -- | 20.94 | 2517 | -- | -- |
| 105.72 | 0.48 | 10.6 | -- | -- | -- | -- | -- | 0.353 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.37 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 21 |
| 24 | 52.16 | temperature | 25 | 720 | < th | dose dependent | rect. | 12 | 23 |
| 25 | 52.18 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 27 | 52.20 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 29 | 52.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 31 | 52.24 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 36 | 52.28 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 37 | 52.28 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 66 | 52.60 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 80 | 52.72 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 85 | 52.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 99 | 52.84 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 272 | 53.36 | temperature | 25 | 720 | < th | dose dependent | sin | 0 | NA |
| 334 | 53.57 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 345 | 53.63 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 3 |
| 346 | 53.63 | temperature | 20 | 4320 | < th | dose dependent | rect. | 23 | 5 |
| 350 | 53.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 354 | 53.65 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 524 | 54.16 | humidity | 60 | 43200 | < th | dose dependent | rect. | 18 | 16 |
| 526 | 54.17 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 527 | 54.17 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 531 | 54.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 540 | 54.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 550 | 54.24 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 552 | 54.25 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 568 | 54.27 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 20 |
| 571 | 54.29 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 584 | 54.33 | humidity | 50 | 43200 | < th | dose dependent | sin | 10 | NA |
| 595 | 54.38 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 597 | 54.38 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 599 | 54.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 615 | 54.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 20 |
| 624 | 54.43 | humidity | 50 | 43200 | < th | dose dependent | sin | 12 | NA |
| 635 | 54.45 | humidity | 50 | 43200 | < th | dose dependent | rect. | 16 | 21 |
| 648 | 54.48 | humidity | 50 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 662 | 54.50 | temperature | 25 | 1440 | < th | dose dependent | sin | 5 | NA |
| 666 | 54.50 | humidity | 50 | 43200 | < th | dose dependent | rect. | 20 | 22 |
| 674 | 54.51 | humidity | 50 | 43200 | < th | dose dependent | rect. | 4 | 14 |
| 677 | 54.51 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 19 |
| 689 | 54.53 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 690 | 54.53 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 5 |
| 696 | 54.53 | humidity | 50 | 43200 | < th | dose dependent | rect. | 4 | 18 |
| 721 | 54.55 | humidity | 50 | 43200 | < th | dose dependent | no | NA | NA |
| 741 | 54.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 801 | 54.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 22 |
| 808 | 54.59 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 9 |
| 835 | 54.61 | humidity | 50 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 859 | 54.63 | humidity | 60 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 889 | 54.66 | humidity | 50 | 43200 | < th | dose dependent | sin | 20 | NA |
| 921 | 54.68 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 1000 | 54.74 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |