Os08g0562800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Multi antimicrobial extrusion protein MatE family protein.
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Os08g0562800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Multi antimicrobial extrusion protein MatE family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 206.21 | 0.675 | 12.5 | 0.646 | 0.991 | -1.05 | 1.23 | 0.33 | 0.241 | 9.82 | 19.47 | 1407 | 5.57 | 0.517 |
| 207.15 | 0.67 | 12.5 | 0.632 | 0.982 | -1.05 | 1.17 | -- | 0.23 | 9.87 | 19.5 | 1406 | 5.57 | 0.533 |
| 211.96 | 0.678 | 12.5 | 0.686 | 0.985 | -1.06 | -- | 0.308 | 0.238 | 9.88 | 19.48 | 1406 | 5.57 | 0.516 |
| 212.42 | 0.679 | 12.6 | 0.632 | 0.966 | -1.08 | -- | -- | 0.234 | 9.84 | 19.5 | 1404 | 5.61 | 0.493 |
| 266.79 | 0.761 | 12.5 | 0.639 | -- | -1.07 | -- | 0.196 | 0.254 | -- | 19.7 | 1341 | 5.67 | 0.517 |
| 281.83 | 0.787 | 12.6 | 0.312 | 1.06 | -- | 1.3 | -- | -0.129 | 9.65 | -- | -- | -- | -- |
| 288.18 | 0.795 | 12.6 | 0.362 | 1.05 | -- | -- | -- | -0.127 | 9.73 | -- | -- | -- | -- |
| 264.43 | 0.757 | 12.5 | 0.5 | -- | -1.05 | -- | -- | 0.245 | -- | 19.65 | 1333 | 5.87 | 0.267 |
| 220.81 | 0.692 | 12.6 | -- | 0.979 | -1.07 | -- | -- | 0.223 | 9.89 | 19.5 | 1404 | 5.62 | 0.45 |
| 354 | 0.879 | 12.7 | 0.352 | -- | -- | -- | -- | -0.125 | -- | -- | -- | -- | -- |
| 291.63 | 0.799 | 12.6 | -- | 1.05 | -- | -- | -- | -0.167 | 9.7 | -- | -- | -- | -- |
| 270.21 | 0.766 | 12.6 | -- | -- | -1.03 | -- | -- | 0.161 | -- | 19.7 | 1330 | 5.9 | 0.183 |
| 357.27 | 0.882 | 12.7 | -- | -- | -- | -- | -- | -0.164 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 216.83 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 2 | 216.94 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 4 | 218.01 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 10 | 219.59 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 13 | 220.07 | wind | 5 | 43200 | < th | dose dependent | rect. | 23 | 4 |
| 15 | 220.82 | wind | 3 | 43200 | > th | dose independent | rect. | 23 | 4 |
| 16 | 221.06 | humidity | 80 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 18 | 221.33 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 21 | 221.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 24 | 222.07 | wind | 3 | 43200 | < th | dose independent | rect. | 23 | 4 |
| 34 | 222.96 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 35 | 223.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 12 |
| 36 | 223.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 12 |
| 44 | 223.46 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 55 | 223.66 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 71 | 223.87 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 98 | 224.13 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 9 |
| 109 | 224.25 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 114 | 224.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 6 |
| 115 | 224.33 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 3 |
| 123 | 224.41 | wind | 1 | 43200 | > th | dose dependent | rect. | 22 | 5 |
| 135 | 224.53 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 140 | 224.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 6 |
| 146 | 224.66 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 179 | 224.97 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 200 | 225.19 | wind | 3 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 211 | 225.29 | wind | 3 | 14400 | < th | dose independent | rect. | 24 | 13 |
| 262 | 225.71 | wind | 3 | 14400 | > th | dose independent | rect. | 24 | 13 |
| 271 | 225.76 | wind | 3 | 14400 | < th | dose independent | sin | 7 | NA |
| 280 | 225.81 | humidity | 50 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 287 | 225.84 | wind | 3 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 290 | 225.86 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 309 | 225.95 | wind | 3 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 376 | 226.35 | wind | 3 | 14400 | > th | dose independent | sin | 7 | NA |
| 418 | 226.58 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 419 | 226.58 | wind | 3 | 14400 | < th | dose dependent | rect. | 3 | 4 |
| 447 | 226.72 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 9 |
| 515 | 227.07 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 14 |
| 519 | 227.08 | wind | 3 | 14400 | < th | dose dependent | sin | 8 | NA |
| 532 | 227.14 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 545 | 227.19 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 582 | 227.36 | wind | 3 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 598 | 227.43 | humidity | 50 | 14400 | > th | dose dependent | rect. | 2 | 5 |
| 614 | 227.49 | wind | 9 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 691 | 227.82 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 720 | 227.94 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 723 | 227.95 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 726 | 227.96 | wind | 9 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 738 | 228.01 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 774 | 228.16 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 855 | 228.52 | wind | 3 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 938 | 228.81 | wind | 3 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 957 | 228.88 | wind | 9 | 14400 | > th | dose dependent | rect. | 6 | 7 |
| 969 | 228.94 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |