Os08g0562200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CUC2.
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Os08g0562200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CUC2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.19 | 0.189 | 10.7 | 1.28 | 0.475 | 0.946 | 0.4 | -0.217 | 0.175 | 15.2 | 28.43 | 251 | -- | -- |
| 16.24 | 0.188 | 10.7 | 1.25 | 0.478 | 0.951 | 0.447 | -- | 0.163 | 15.2 | 28.29 | 240 | -- | -- |
| 16.61 | 0.19 | 10.6 | 1.32 | 0.474 | 0.925 | -- | -0.509 | 0.191 | 15 | 28.43 | 228 | -- | -- |
| 16.91 | 0.192 | 10.7 | 1.25 | 0.474 | 0.941 | -- | -- | 0.168 | 15.1 | 28.14 | 238 | -- | -- |
| 19.2 | 0.204 | 10.6 | 1.29 | -- | 0.847 | -- | -0.413 | 0.173 | -- | 28.98 | 1127 | -- | -- |
| 28.84 | 0.252 | 10.7 | 0.991 | 0.227 | -- | 0.333 | -- | -0.0382 | 14.1 | -- | -- | -- | -- |
| 29.25 | 0.253 | 10.7 | 1 | 0.227 | -- | -- | -- | -0.0364 | 13.9 | -- | -- | -- | -- |
| 19 | 0.203 | 10.7 | 1.27 | -- | 0.931 | -- | -- | 0.168 | -- | 27.7 | 1116 | -- | -- |
| 53.04 | 0.341 | 10.7 | -- | 0.335 | 0.405 | -- | -- | -0.073 | 13.9 | 28.14 | 238 | -- | -- |
| 32.36 | 0.266 | 10.7 | 0.991 | -- | -- | -- | -- | -0.0416 | -- | -- | -- | -- | -- |
| 55.62 | 0.349 | 10.7 | -- | 0.208 | -- | -- | -- | -0.148 | 13.8 | -- | -- | -- | -- |
| 55.79 | 0.348 | 10.7 | -- | -- | 0.363 | -- | -- | -0.102 | -- | 37.01 | 997 | -- | -- |
| 58.26 | 0.356 | 10.7 | -- | -- | -- | -- | -- | -0.152 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.47 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 2 | 16.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 3 | 16.49 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 6 | 16.59 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 8 | 16.60 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 10 | 16.62 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 14 | 16.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 21 | 16.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 24 | 16.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 23 |
| 29 | 16.92 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 54 | 17.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 57 | 17.17 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 20 |
| 71 | 17.28 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 76 | 17.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 80 | 17.35 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 93 | 17.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 118 | 17.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 130 | 17.48 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 138 | 17.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 4 |
| 151 | 17.50 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 156 | 17.51 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 14 |
| 196 | 17.54 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 210 | 17.55 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 247 | 17.57 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 273 | 17.59 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 274 | 17.60 | temperature | 25 | 1440 | < th | dose dependent | sin | 7 | NA |
| 361 | 17.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 367 | 17.67 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 370 | 17.67 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 11 |
| 450 | 17.73 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 11 |
| 477 | 17.74 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 556 | 17.80 | temperature | 10 | 1440 | > th | dose dependent | sin | 12 | NA |
| 574 | 17.81 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 3 |
| 575 | 17.81 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 4 |
| 607 | 17.82 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 635 | 17.83 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 696 | 17.87 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 711 | 17.87 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 23 |