Os08g0561900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Alpha expansin 26.
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Os08g0561900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Alpha expansin 26.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 165.07 | 0.604 | 2.84 | 0.311 | 0.0296 | 0.667 | 0.433 | 2.96 | 0.173 | 10.5 | 1001 | 5914 | -- | -- |
| 173.1 | 0.613 | 2.86 | 0.238 | 0.028 | 0.939 | 0.467 | -- | 0.189 | 10.5 | 1001 | 5990 | -- | -- |
| 165.62 | 0.599 | 2.84 | 0.326 | 0.0716 | 0.675 | -- | 2.98 | 0.173 | 6.19 | 1000 | 5924 | -- | -- |
| 168.46 | 0.604 | 2.87 | 0.173 | 0.0787 | 0.923 | -- | -- | 0.182 | 5.62 | 998.8 | 11660 | -- | -- |
| 165.88 | 0.6 | 2.84 | 0.328 | -- | 0.67 | -- | 2.98 | 0.174 | -- | 1001 | 5923 | -- | -- |
| 190.77 | 0.648 | 2.88 | 0.349 | 0.044 | -- | 0.444 | -- | 0.105 | 9.88 | -- | -- | -- | -- |
| 191.32 | 0.648 | 2.88 | 0.364 | 0.0777 | -- | -- | -- | 0.104 | 6.37 | -- | -- | -- | -- |
| 168.8 | 0.605 | 2.86 | 0.184 | -- | 0.929 | -- | -- | 0.191 | -- | 998.7 | 11660 | -- | -- |
| 169.26 | 0.606 | 2.87 | -- | 0.0874 | 0.963 | -- | -- | 0.18 | 5.52 | 998.9 | 11671 | -- | -- |
| 191.64 | 0.647 | 2.88 | 0.366 | -- | -- | -- | -- | 0.106 | -- | -- | -- | -- | -- |
| 194.81 | 0.653 | 2.89 | -- | 0.0828 | -- | -- | -- | 0.0639 | 6.13 | -- | -- | -- | -- |
| 169.64 | 0.607 | 2.87 | -- | -- | 0.97 | -- | -- | 0.177 | -- | 998.9 | 11690 | -- | -- |
| 195.16 | 0.652 | 2.89 | -- | -- | -- | -- | -- | 0.0655 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 152.31 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 7 | 153.08 | wind | 7 | 4320 | < th | dose independent | rect. | 18 | 9 |
| 12 | 153.72 | wind | 7 | 4320 | > th | dose independent | rect. | 18 | 9 |
| 14 | 153.77 | wind | 7 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 17 | 153.82 | wind | 7 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 20 | 153.86 | wind | 7 | 4320 | > th | dose dependent | rect. | 18 | 9 |
| 24 | 153.93 | wind | 7 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 28 | 154.17 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 157 | 156.77 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 173 | 158.90 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 176 | 158.91 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 181 | 158.91 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 225 | 160.74 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 349 | 161.79 | wind | 7 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 362 | 161.85 | humidity | 90 | 1440 | < th | dose dependent | rect. | 23 | 8 |
| 367 | 161.90 | humidity | 70 | 1440 | > th | dose dependent | rect. | 2 | 2 |
| 380 | 162.09 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 5 |
| 384 | 162.17 | humidity | 90 | 1440 | < th | dose dependent | rect. | 23 | 5 |
| 388 | 162.47 | humidity | 70 | 1440 | > th | dose dependent | rect. | 2 | 5 |
| 420 | 162.83 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 21 | 11 |
| 439 | 162.98 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 440 | 162.99 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 22 | 10 |
| 455 | 163.02 | wind | 7 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 456 | 163.02 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 541 | 163.37 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 543 | 163.37 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 555 | 163.44 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 9 | NA |
| 577 | 163.53 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 8 | NA |
| 578 | 163.53 | humidity | 80 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 629 | 163.64 | radiation | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 632 | 163.64 | humidity | 90 | 1440 | < th | dose independent | rect. | 2 | 4 |
| 678 | 163.74 | temperature | 20 | 720 | < th | dose independent | rect. | 10 | 10 |
| 736 | 163.91 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 3 |
| 742 | 163.94 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 744 | 163.94 | humidity | 50 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 765 | 163.98 | humidity | 90 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 769 | 163.99 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 1 |
| 775 | 164.01 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 785 | 164.06 | temperature | 20 | 720 | < th | dose independent | rect. | 13 | 7 |
| 844 | 164.21 | atmosphere | 995 | 14400 | < th | dose independent | sin | 22 | NA |
| 876 | 164.26 | atmosphere | 995 | 14400 | > th | dose independent | sin | 22 | NA |
| 946 | 164.46 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 8 |
| 975 | 164.56 | atmosphere | 995 | 14400 | < th | dose dependent | sin | 22 | NA |